Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2973g00011 ATGGAAGCACAAGAATATTTCCAGACAAGCTTCTGCCCACAATTCCCCTCAGACAACATGACAACCACCAACAACGTCAACGCCTCTTCCGACCACTTCATCGTCGAGGACTTCTTCGACTTCTCCAACGACAACGACGAGGCTGCCATTACCGACCCCACCTTTGATTCTCTTCCCGCCAACTCAACCGATGATTCTCCCACCGTAACCCCCGTCGATAGCACCAGCAATTCCTCCTCCTGCCACCCCAATTTTGTGGCCGACATTGCCGACGGCCATTTCTCCAGTGACCTCTCCGTCCCGTATGATGATCTTGCGGAGCTGGAATGGCTTTCAAAATTTGGGGAGGAATCATTTTCGAGCGAGGACTTGCAGAAGCTGCAGCTGATATCTGGCATGAAAGCGCCAAACGACGCCGCATCGGAGACCCGTGAACCCAACCCGGTATTCAACCCACAGGTGTCGGTTCCGGCCAAGGCCCGCAGCAAGCGGTCCCGTGGGCCCCCATGCAATTGGACCTCTCGCCTTCTTGTCCTCTCCCCATCGACCACCACGTCGTCTTCTCCCTCCGACCCCGTCGCCACCCCAAAGAAGCCTGCGCCGAGGAGGAGGGACACCGCCGATGGAGGGGATGGCCGCAAGTGCCTGCATTGCGCCACGGATAAGACCCCCCAGTGGCGGACTGGGCCCATGGGCCCAAAAACTCTCTGCAATGCTTGCGGCGTGAGGTATAAGTCGGGCCGGCTGGTGCCCGAGTACAGGCCCGCGGCGAGCCCAACTTTCGTGCTAACGAAGCATTCCAACTCGCACCGTAAGGTGATGGAGCTCCGGCGTCAGAAGGAGACGGTGAGGGCCCAGCAACAACAGTTGCTGCAGCTGCAACATCATCAGAATATGATGTTTGATGTTCCATCCAACGGTGATGATTACTTGATCCATCAGCACGTAGGCCCCGATTTCTCGCATTTGATCTAG 975 0.5713 MEAQEYFQTSFCPQFPSDNMTTTNNVNASSDHFIVEDFFDFSNDNDEAAITDPTFDSLPANSTDDSPTVTPVDSTSNSSSCHPNFVADIADGHFSSDLSVPYDDLAELEWLSKFGEESFSSEDLQKLQLISGMKAPNDAASETREPNPVFNPQVSVPAKARSKRSRGPPCNWTSRLLVLSPSTTTSSSPSDPVATPKKPAPRRRDTADGGDGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVMELRRQKETVRAQQQQLLQLQHHQNMMFDVPSNGDDYLIHQHVGPDFSHLI 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2973g00011 324 CDD ZnF_GATA 214 261 IPR000679 GO:0006355|GO:0043565
Gabi2973g00011 324 MobiDBLite consensus disorder prediction 50 77 - -
Gabi2973g00011 324 Gene3D - 211 291 IPR013088 GO:0006355|GO:0008270
Gabi2973g00011 324 PANTHER GATA TRANSCRIPTION FACTOR 24 288 - -
Gabi2973g00011 324 ProSitePatterns GATA-type zinc finger domain. 215 240 IPR000679 GO:0006355|GO:0043565
Gabi2973g00011 324 MobiDBLite consensus disorder prediction 197 213 - -
Gabi2973g00011 324 ProSiteProfiles GATA-type zinc finger domain profile. 209 245 IPR000679 GO:0006355|GO:0043565
Gabi2973g00011 324 Coils Coil 273 296 - -
Gabi2973g00011 324 Pfam GATA zinc finger 215 248 IPR000679 GO:0006355|GO:0043565
Gabi2973g00011 324 FunFam GATA transcription factor 205 291 - -
Gabi2973g00011 324 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 211 273 - -
Gabi2973g00011 324 MobiDBLite consensus disorder prediction 175 193 - -
Gabi2973g00011 324 PIRSF Txn_fac_GATA_plant 8 304 IPR016679 GO:0003677|GO:0005634|GO:0045893
Gabi2973g00011 324 MobiDBLite consensus disorder prediction 135 213 - -
Gabi2973g00011 324 SMART GATA_3 209 259 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2973g00011 Gabi-Chr2973 88835 90315 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2973g00011 26 324 C2C2-Gata Transcription Factor Family AT4G32890 50.774 6.26e-97 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gabi2973g00011 GATA 2.9e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2973g00011 - - gmx:100776588 437.187