Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2973g00007 ATGGAGTCTGTTGCCTCCAATTCTAGTTCCCCATCAAACCATAACCACCACCATCATCACCCTCGGTTCAAACCCAGCCAACCTATTTCAGACCGAATAGTTCGAGCCCTCCGCCACCGCCTCCGTCTTCTCCACCGTTCAAGCTCAACCTTCTTCATATTTGGTGCCACCGGAAACGTCTACACAGTTAGCTTATCCTCCACACCCTCATGCACGTGCCCTGATCGCACAACCCCATGCAAACACATCCTCTTCGTTTTCATTCGAGTCTTGGGTGTGTCCCTCGACGATGTGTGTCTAAGAAGAAGAACCCTTCGACCATGCCAGCTTCAACGCCTTCTCAATATGCCCACGTTGCCAGAAGCAATTGCAGGTGGCACCTTACGCCAAAGGTTTCACCAACTATTCTTTGATGGACGACAAGGAGGGTCAACAAGGCCAAGCATAGAGATGGAGGATGGTGCAACGTGCCCGGTTTGTCTTGAGGAAATGAAGAAAGAAGAAAAGTTGATGGCATGTGGAACATGTCGTAACCCTATTCATGAAGAATGCTTGGTGAGGTGGAAAAGAAGCAGGGGAAGAAGAACAGCTATTTGTGTGATTTGTAGAGCAAGGTGGAGGGATAGGATGGAACAGGATAAGTATCTTAACCTATCTGCTTATGTTAGCGAGGTTGATATGGCTCAGCCCAGTGGGGGTCTTTGCACTGGCTAA 714 0.4902 MESVASNSSSPSNHNHHHHHPRFKPSQPISDRIVRALRHRLRLLHRSSSTFFIFGATGNVYTVSLSSTPSCTCPDRTTPCKHILFVFIRVLGVSLDDVCLRRRTLRPCQLQRLLNMPTLPEAIAGGTLRQRFHQLFFDGRQGGSTRPSIEMEDGATCPVCLEEMKKEEKLMACGTCRNPIHEECLVRWKRSRGRRTAICVICRARWRDRMEQDKYLNLSAYVSEVDMAQPSGGLCTG 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2973g00007 237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 143 220 IPR013083 -
Gabi2973g00007 237 MobiDBLite consensus disorder prediction 1 26 - -
Gabi2973g00007 237 ProSiteProfiles Zinc finger SWIM-type profile. 61 91 IPR007527 GO:0008270
Gabi2973g00007 237 Pfam Ring finger domain 156 203 IPR001841 -
Gabi2973g00007 237 Pfam SWIM zinc finger 61 89 IPR007527 GO:0008270
Gabi2973g00007 237 PANTHER RING FINGER AND SWIM DOMAIN-CONTAINING PROTEIN 2 13 210 IPR039903 GO:0061630
Gabi2973g00007 237 ProSiteProfiles Zinc finger RING-type profile. 157 203 IPR001841 -
Gabi2973g00007 237 SUPERFAMILY RING/U-box 148 209 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2973g00007 152 213 C3H Transcription Factor Family AT3G58720 35.484 7.11e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2973g00007 - - var:108321788 374.4