Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2970g00001 ATGGCAGATGATCAATTTCAAGCAAGTGCAAACTGGTGGGAATCAGCAAGAAACTTGAGGTATGAAAGTGGGGAATCACAATCTTCCTCTTCTGCTCTCACCAACATAGGAAACTTTTCTTGGCAACATGATATGGTGGACATGAAACCAAGGTCTTCCATGGATTCCATGTCTCCCTCAGGTACTTCCTCTGTGGTTTTCCATGATACACATAAGCTTCAACCTCCTGATTCTGCCACCTCCACCAATGACTCCAACTTGCATATGATGGGTTTGGGACTTTCATCCCAAGCCATTGATTGGAATCAAGCATCTTTGATAAGAGGTGAGAAGGCTTCAGAGAGCAGTTTCAGGTCGATGCTGCAAGAGAATTTGAACTCATCAAGCACAAATTTTCAACAAGAAACTGGGATTGGTTTGTCTCAAGTTCATTGGAGACCAGAAAAGTTGTTCACTGCAGAATCTTCCACCAATGAATTCAAGCAAGTGAATAGGGGTTTCTCTTTGGATCAAACACAGTTTAGTCCTCAATATAGTTCTGGGGACAGTACAATCACAAGCCAAGCTTTACCTTCTACTTTTCATATGGATTCCTCAGCTTTATATGGTAACCCTTCAATACTACAAGGACTATTAGGACCTGAAAGCAATCAACAACCCCAGCAAGGTTCGTTTGAGAATCGCCCCATGAATTTTCCATACTCAACAAGCTATGGCTTGAACTCCAATGAGTTAATGCCTTCTTGGGCTAAAGTTCCTCAGTTCTTGAGAGCTTCACCTCCAAAACAACCACCCAATAACCAATTGCATTTCACCAACAACGCTCCCTTTTGGAATGCTTCTGAGGCTACTATTAAGGATGCTCGATCCACCTTCTTCCCGTCATTGCAGCCCCCATTTTCCACACCAAATTTTGCTGTACAACCAAAGAATATATCTGAAGTTAGGGACTCGGGTCCTGCGGTGAAGAAAAGTGCGAGTGAAACAGCACCCAAAAGGCCAAGGAACGAAACTCCATCACCTTTGCCAGCTTTTAAGGTGAGAAAAGAGAAGATGGGGGACAGAATCACTGCACTCCAACAATTGGTTTCACCTTTCGGAAAGACTGATACAGCTTCAGTGCTTTCTGAAGCCATTGAATATATCAAATTCCTCCATGAACAAGTAACCGTTTTAAGCACCCCATATATGAAAAGTGGTGCTCCAATACAGCATCAACAGAGTTCTGGTAAATCTAAGGAAGCTGAGGATCCAAAGCAGGATCTTAGAAGCCGAGGGCTATGCTTGGTGCCAGTTTCTAGTACATTTCCAGTGACTCATGAACCCACAGTTGAATTTTGGACACCAACATTTGGAGGAACTTACAGATAA 1371 0.4303 MADDQFQASANWWESARNLRYESGESQSSSSALTNIGNFSWQHDMVDMKPRSSMDSMSPSGTSSVVFHDTHKLQPPDSATSTNDSNLHMMGLGLSSQAIDWNQASLIRGEKASESSFRSMLQENLNSSSTNFQQETGIGLSQVHWRPEKLFTAESSTNEFKQVNRGFSLDQTQFSPQYSSGDSTITSQALPSTFHMDSSALYGNPSILQGLLGPESNQQPQQGSFENRPMNFPYSTSYGLNSNELMPSWAKVPQFLRASPPKQPPNNQLHFTNNAPFWNASEATIKDARSTFFPSLQPPFSTPNFAVQPKNISEVRDSGPAVKKSASETAPKRPRNETPSPLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVTVLSTPYMKSGAPIQHQQSSGKSKEAEDPKQDLRSRGLCLVPVSSTFPVTHEPTVEFWTPTFGGTYR 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2970g00001 456 MobiDBLite consensus disorder prediction 53 84 - -
Gabi2970g00001 456 CDD bHLH_AtbHLH_like 342 393 IPR045239 -
Gabi2970g00001 456 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 346 403 IPR036638 GO:0046983
Gabi2970g00001 456 MobiDBLite consensus disorder prediction 313 344 - -
Gabi2970g00001 456 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 336 385 IPR011598 GO:0046983
Gabi2970g00001 456 MobiDBLite consensus disorder prediction 400 422 - -
Gabi2970g00001 456 MobiDBLite consensus disorder prediction 49 84 - -
Gabi2970g00001 456 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 132 437 - -
Gabi2970g00001 456 FunFam Transcription factor bHLH123 family 346 408 - -
Gabi2970g00001 456 Gene3D - 346 408 IPR036638 GO:0046983
Gabi2970g00001 456 SMART finulus 347 391 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2970g00001 Gabi-Chr2970 21591 24757 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2970g00001 108 456 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 47.273 1.29e-80 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2970g00001 - - gmx:100778697 691.419