Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gabi2967g00036 | ATGGTGAGCCAACGGCAGCGACTTGCTCGAAAGCGATTCAAATCAGAGCACCCTGAACTGTTCCCCAAATCAGAACCAACTCCCCCTAAAGACCCTGAAAAGAAGAAGAAGAAGAAGATAAAGAAGAAAACGAATGTGTTGAAGCCCAAACAACAAGGGTTCAAAACCAATTCAAGAAAACACCCTCTTAGAGTTCCTGGTATGAAGCCCGGTGACACCTGTTTTATCTGCAAGTCCATTGACCATATTGCTAAGCTCTGTCCCCAAAAATCTGAATGGGAAAGGAACAAGATATGTTTGCGGTGTAGACGACGTGGTCATAGAGCCAAGAACTGCCCTGAGGTGCAAGATGGCACCGACGATGCCAAGTATTGCTATAATTGTGGTGGAACTGGGCACTCACTTTCAAATTGTCTTCATCCTCTTCAAGAAGGAGGGACGAAGTTTGCTGAGTGCTTTGTCTGTAATCAACGTGGACATTTGAGTAAAAACTGCCCTCAAAATGCTCATGGCATTTATCCAAAGGGTGGTTGCTGTAAAATATGTGGTGGTGTGACACATTTGGCAAAGGATTGTCCTGACAAAGGGAAGATGGGATCCATTGCTGCTAACGGGCCTTTTGATAGATCAATAAGAAATGAAGAGAGGCCCAGGGGTCAGGTTACCAAATTTATAAGCGGAGACGATAGTGAGGATGACTTCATGACAGAAGACATAAATAGTGGCGACAAGAACAAGTCCTCAAAGTCAAAAGATGGCCATGTAAAACCAAAGAAGAAGGGACCTAAAGTTGTGAACTTTATCTGA | 807 | 0.4399 | MVSQRQRLARKRFKSEHPELFPKSEPTPPKDPEKKKKKKIKKKTNVLKPKQQGFKTNSRKHPLRVPGMKPGDTCFICKSIDHIAKLCPQKSEWERNKICLRCRRRGHRAKNCPEVQDGTDDAKYCYNCGGTGHSLSNCLHPLQEGGTKFAECFVCNQRGHLSKNCPQNAHGIYPKGGCCKICGGVTHLAKDCPDKGKMGSIAANGPFDRSIRNEERPRGQVTKFISGDDSEDDFMTEDINSGDKNKSSKSKDGHVKPKKKGPKVVNFI | 268 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gabi2967g00036 | 268 | ProSiteProfiles | Zinc finger CCHC-type profile. | 152 | 167 | IPR001878 | GO:0003676|GO:0008270 | |
| Gabi2967g00036 | 268 | Pfam | Zinc knuckle | 124 | 138 | IPR001878 | GO:0003676|GO:0008270 | |
| Gabi2967g00036 | 268 | Pfam | Zinc knuckle | 152 | 167 | IPR001878 | GO:0003676|GO:0008270 | |
| Gabi2967g00036 | 268 | PANTHER | OS04G0555800 PROTEIN | 1 | 267 | - | - | |
| Gabi2967g00036 | 268 | SMART | c2hcfinal6 | 98 | 114 | IPR001878 | GO:0003676|GO:0008270 | |
| Gabi2967g00036 | 268 | SMART | c2hcfinal6 | 73 | 89 | IPR001878 | GO:0003676|GO:0008270 | |
| Gabi2967g00036 | 268 | SMART | c2hcfinal6 | 151 | 167 | IPR001878 | GO:0003676|GO:0008270 | |
| Gabi2967g00036 | 268 | SMART | c2hcfinal6 | 178 | 194 | IPR001878 | GO:0003676|GO:0008270 | |
| Gabi2967g00036 | 268 | SMART | c2hcfinal6 | 124 | 140 | IPR001878 | GO:0003676|GO:0008270 | |
| Gabi2967g00036 | 268 | MobiDBLite | consensus disorder prediction | 209 | 230 | - | - | |
| Gabi2967g00036 | 268 | MobiDBLite | consensus disorder prediction | 34 | 48 | - | - | |
| Gabi2967g00036 | 268 | Gene3D | - | 119 | 171 | - | - | |
| Gabi2967g00036 | 268 | SUPERFAMILY | Retrovirus zinc finger-like domains | 67 | 115 | IPR036875 | GO:0003676|GO:0008270 | |
| Gabi2967g00036 | 268 | MobiDBLite | consensus disorder prediction | 203 | 268 | - | - | |
| Gabi2967g00036 | 268 | SUPERFAMILY | Retrovirus zinc finger-like domains | 119 | 169 | IPR036875 | GO:0003676|GO:0008270 | |
| Gabi2967g00036 | 268 | ProSiteProfiles | Zinc finger CCHC-type profile. | 99 | 114 | IPR001878 | GO:0003676|GO:0008270 | |
| Gabi2967g00036 | 268 | MobiDBLite | consensus disorder prediction | 1 | 65 | - | - | |
| Gabi2967g00036 | 268 | ProSiteProfiles | Zinc finger CCHC-type profile. | 125 | 138 | IPR001878 | GO:0003676|GO:0008270 | |
| Gabi2967g00036 | 268 | FunFam | Zinc finger CCHC-type-containing 9 | 149 | 201 | - | - | |
| Gabi2967g00036 | 268 | MobiDBLite | consensus disorder prediction | 12 | 33 | - | - | |
| Gabi2967g00036 | 268 | Gene3D | - | 67 | 118 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gabi2967g00036 | 99 | 195 | C2H2 Transcription Factor Family | AT5G20220 | 28.947 | 2.56e-06 | 46.2 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gabi2967g00036 | - | - | gmx:121174300 | 391.349 |