Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2967g00017 ATGGGGAAAGCACCCTGCTGTGAGAAACATGGAGTTAAAAGGGGAGCTTGGACTCCTGAAGAAGACCTAGCCTTAGTTGACTACATCAACAAGCATGGCCATGGAAGTTGGCGTACACTCCCCAAGCATGCAGGTCTCCTACGATGTGGAAAGAGCTGTCGGCTTCGGTGGATAAACTATCTTCGGCCTGGCATCAAGCGCGGCCCATTTACTAATGAAGAAGAAAGTACTATTATTCAACTTCATGGCATGCTTGGTAACAGGTGGGCTGCTATAGCATCCCAACTACCTGGAAGAACAGACAATGAGATTAAGAACTATTGGAACACCCATCTAAAGAAGCGCCTCCTTCGGTCATGTCATTCCCTAGGGCCAAAACAGCCATGTGTCATTCCTGATCAAAGGATTTTCAAGTCTGAATCACTTTCTACGCGTCACATGGTACAATGGGAAAGTGCCAGAGTTGAGGCAGAGGCAAGGTTGTCACTGGAATCCTCATTGCTTAATTCATGGTCAACGAGTAAAACATGCCCTGATTACTTTCTTCAACTTTGGCATTCTGAGGTTGGACAGTCATTTCGCTTGATCAAAGGAAATGAAGGAGTAGTGTGTCAAAGCCCTCTCTCACAAGTATCATCATCATCATCAAAATTGGAGTCATTTTCAGATGTCTCATTGCAGGTGAAAAACACTGTGACTAGTAGCTCCAAACCAAAGTTTGAAGATGACAACATGATCCAAGAACAATCAAGTAGCTACAAACCAAAGCTCGATTATGACACAGCTGGGTCAGAGTCAGGCAATTATGAATTTCTTGATACTTCTGATTCTGCTCTAAAGCACCTGCTAGACATGTCTGATAGCGATATAGGATTCTTGGCACAAACCGACAATTTCCTGAATCTCCTTGATGGTAGATGTGACTAA 927 0.4401 MGKAPCCEKHGVKRGAWTPEEDLALVDYINKHGHGSWRTLPKHAGLLRCGKSCRLRWINYLRPGIKRGPFTNEEESTIIQLHGMLGNRWAAIASQLPGRTDNEIKNYWNTHLKKRLLRSCHSLGPKQPCVIPDQRIFKSESLSTRHMVQWESARVEAEARLSLESSLLNSWSTSKTCPDYFLQLWHSEVGQSFRLIKGNEGVVCQSPLSQVSSSSSKLESFSDVSLQVKNTVTSSSKPKFEDDNMIQEQSSSYKPKLDYDTAGSESGNYEFLDTSDSALKHLLDMSDSDIGFLAQTDNFLNLLDGRCD 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2967g00017 308 FunFam MYB transcription factor 69 116 - -
Gabi2967g00017 308 Gene3D - 14 66 - -
Gabi2967g00017 308 CDD SANT 69 112 IPR001005 -
Gabi2967g00017 308 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 249 - -
Gabi2967g00017 308 SMART sant 66 114 IPR001005 -
Gabi2967g00017 308 SMART sant 13 63 IPR001005 -
Gabi2967g00017 308 CDD SANT 16 61 IPR001005 -
Gabi2967g00017 308 Gene3D - 69 116 - -
Gabi2967g00017 308 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gabi2967g00017 308 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gabi2967g00017 308 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gabi2967g00017 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gabi2967g00017 308 FunFam Myb transcription factor 11 67 - -
Gabi2967g00017 308 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Gabi2967g00017 308 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gabi2967g00017 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gabi2967g00017 308 MobiDBLite consensus disorder prediction 234 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2967g00017 Gabi-Chr2967 184379 187526 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2967g00017 1 295 MYB Transcription Factor Family AT3G61250 52.961 2.93e-92 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi2967g00017 Myb_DNA-binding 8.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2967g00017 K09422 - gmx:100782075 493.041