Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2967g00015 ATGGAGTGCCAGCCACTACAAAAGGCAAAACCAAAACACAGGAAGGGCTTGTGGTCACCTGAAGAAGACAATAAGCTCAGAAACTACATCCTTAAGCATGGTCATGGCTGCTGGAGCTCTGTCCCCATTAAGACAGGCTTGCAAAGGAATGGAAAGAGCTGCAGACTAAGGTGGATTAACTATCTAAGGCCAGGATTGAAGAGAGGGAAGTTCAGCAAACAGGAGGAGGAAACAATCATGACCCTTCACCACATGTCAGGCAACAAGTGGTCACAGATAGCACAGCATTTGCCAGGAAGGACAGACAATGAGATAAAAAACCACTGGCATTCATATTTGAAAAAGAGAGTGGTCAAAGCTAAGGAAATGGAATCTCATAAACAAATTCATTGTGCTAACTCAAGTTCAGATACCATGGACTCTTCACCCTCTCTCCAAAAGCTTGCAACTCAAGGCCTACAGAATTATAACTTCCCCAAAGAGGCTCATCAAAGCTCCTTACCAAAACTGTTATTTGCTGAGTGGCTTTCTCTGGATCATCTACATGGTGGAAACTCTGCAAATTCAGTTGACTCTTTGGTCTTGAGGAATGGATTTGATCACAATTCAACTTTTCAAGAAGCTGCAATGCATGATATGTCAGAAGGACCATTTGGTCGAGATTATCATAACAGTCTAACTCATAGTTCAGCCCCTCACATGTTCAATTCACAGCTAAAGTTTGCAAATCAAATGGTGGGAAATGGCTTCATCCATTGTATACCTGGGGTTGACTTATGTAGCAATTTCAGCTTGAGCAATGATTCAATGTATGTATGA 819 0.4212 MECQPLQKAKPKHRKGLWSPEEDNKLRNYILKHGHGCWSSVPIKTGLQRNGKSCRLRWINYLRPGLKRGKFSKQEEETIMTLHHMSGNKWSQIAQHLPGRTDNEIKNHWHSYLKKRVVKAKEMESHKQIHCANSSSDTMDSSPSLQKLATQGLQNYNFPKEAHQSSLPKLLFAEWLSLDHLHGGNSANSVDSLVLRNGFDHNSTFQEAAMHDMSEGPFGRDYHNSLTHSSAPHMFNSQLKFANQMVGNGFIHCIPGVDLCSNFSLSNDSMYV 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2967g00015 272 CDD SANT 18 62 IPR001005 -
Gabi2967g00015 272 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Gabi2967g00015 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Gabi2967g00015 272 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Gabi2967g00015 272 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Gabi2967g00015 272 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Gabi2967g00015 272 FunFam MYB transcription factor 12 68 - -
Gabi2967g00015 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Gabi2967g00015 272 SMART sant 14 64 IPR001005 -
Gabi2967g00015 272 SMART sant 67 115 IPR001005 -
Gabi2967g00015 272 PANTHER MYB DOMAIN PROTEIN 55 8 233 - -
Gabi2967g00015 272 CDD SANT 70 113 IPR001005 -
Gabi2967g00015 272 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Gabi2967g00015 272 Gene3D - 70 141 - -
Gabi2967g00015 272 Gene3D - 15 67 - -
Gabi2967g00015 272 FunFam MYB transcription factor 70 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2967g00015 Gabi-Chr2967 176385 178766 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2967g00015 7 192 MYB Transcription Factor Family AT5G52260 51.232 2.14e-61 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi2967g00015 Myb_DNA-binding 4.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2967g00015 K09422 - gmx:778167 448.743