Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2967g00005 ATGACTCCACCAATGGAACACAACGGCGATTCCACGGCCTGTGAGTCTCAGAGATCCATTCCGACGCCGTTTGTCAGCAAGACATACCAGCTCGTTGACGATCACAATATCGACGATGTGATTTCCTGGAACGATGCTGGATCATCCTTCATCGTATGGAAACCTACCGTTTTCGCCACGGATTTGCTTCCCAAATATTTCAGGCATAACAAGTTCTCCAGCTTTGTTCGCCAACTCAACTCTTACGGATTCAGAAAAGTTGCACCTGATCGGTGGGAATTCTCGAACGAGTGTTTCCGAAGAGGCAAGAAACTACTTCTCTGTGAAATTCAGCGAGGGAATATCCTCTCAGCATCGCCGCCGGCGCCTTTGAATGCCGCAGTAACTGCGACCGTTGCGGTTCCGATCTTGTCGCCGTCGAACTCAGGGGAGGAGGAGCAAGTGATTTCTTCGAACTCGTCATCATCGAGAGCGCGGGCGGAGCTATTGGAAGAGAGCGAGAGGCTGAGAAAAGAGAACTTTAAGTTAAACAAGGAATTAGAAGAGATGAGATCGCTCTACAGAAATATATTCAATCTCATTTTGAATCACGCAAACATTGACGGCGGTTCGCAAGGTAGGGAAGATGGTTACACAGAGGCGGAAACACTTCATTTGATGCCGATGAGGCGTTGCTCCGGCGAGGATGAAGCGGCAATGGTGGTGGAGGAAATGAACCCGAAGCGAGCAAGAGAGGATGACACGGTGTTAAGACTGCATCAGCCGGGCCATGCGAAAGTGAAATCAGAGCCGTTAGATTAG 801 0.4956 MTPPMEHNGDSTACESQRSIPTPFVSKTYQLVDDHNIDDVISWNDAGSSFIVWKPTVFATDLLPKYFRHNKFSSFVRQLNSYGFRKVAPDRWEFSNECFRRGKKLLLCEIQRGNILSASPPAPLNAAVTATVAVPILSPSNSGEEEQVISSNSSSSRARAELLEESERLRKENFKLNKELEEMRSLYRNIFNLILNHANIDGGSQGREDGYTEAETLHLMPMRRCSGEDEAAMVVEEMNPKRAREDDTVLRLHQPGHAKVKSEPLD 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2967g00005 266 Coils Coil 152 186 - -
Gabi2967g00005 266 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 11 194 IPR027725 -
Gabi2967g00005 266 Gene3D - 16 113 IPR036388 -
Gabi2967g00005 266 PRINTS Heat shock factor (HSF) domain signature 75 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi2967g00005 266 PRINTS Heat shock factor (HSF) domain signature 24 47 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi2967g00005 266 PRINTS Heat shock factor (HSF) domain signature 62 74 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi2967g00005 266 Pfam HSF-type DNA-binding 24 112 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi2967g00005 266 SMART hsfneu3 20 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi2967g00005 266 SUPERFAMILY "Winged helix" DNA-binding domain 21 112 IPR036390 -
Gabi2967g00005 266 FunFam Heat stress transcription factor B-4 16 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2967g00005 Gabi-Chr2967 76174 77742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2967g00005 2 226 HSF AT5G62020 48.148 1.21e-68 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gabi2967g00005 HSF_DNA-bind 6.5e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2967g00005 K09419 - gmx:100780987 290.041