Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2967g00004 ATGGCTGTTCCCTTCAACCTTGTACTCTCCTACTTTGTCGTGTTCCATTTCTTGTGCGCCATTGCAGACTACAGTGGACAAAACCCAGAAAAAATTTCCCTCCTTTCCTTCAAAAATGGTCTCCAAAACCCTCACGTTTTGGCTTCGTGGCACCCCTCAACCCCGCACTGCAACTGGGTTGGCGTCACTTGCCAACTCGGCCGAGTCACCTCGCTCTCTCTTCCATCTCGCTACCTCAGAGGCACACTCTCTTCGTCCCTTTTCTCACTCTCGTCCCTCACTGTCCTCAACCTCGATGACAACCAGTTTTCCGGCGAAATCTCCGGCGAACTCGCTGAGTTGGTTCAGCTAGAAACTCTCAGACTCGGTTCCAACTCGTTCGCCGGGAAAATTCCACCGGAGCTGAGCCTCTTGACAAAACTGCGCACCCTCGACCTCTCAGGCAATGCCCTCACCGGAGAATTACCGGGAAGCATCGGAAACCTGACCAGGCTGCAGTTCCTGGACCTCAGCAACAACCTTCTCTCAGGTTATCTTCCGAAAACTCTCTTCACCGGAACTCTTTCTTTGATTTCTGTTGATATCTCGAACAACTCGTTTTCCGGTGCACTGCCACCGGGAATCGGGAACTGGAGGAACCTCACTGCCCTTTACGTGGGGATTAACAAGTTGTCGGGTACATTGCCTAAGGAAATTGGGGAGCTTTCGAAGCTTGAAGTCTTGTATTCACCTTCCTGTTTCATTGAAGGTCCATTGCCCGAGGAAATGGCAAAGCTCAAGTCGTTGACCAAACTTGACCTTTCTTACAACCCCTTGAGGTGTTCAATCCCAAAGTTCATTGGGAAGTTGCTGAATTTGAAAATCTTAAACCTTGTCTTTGCTCAGCTTAATGGGTCTGTGCCAGCTGAGCTGGGAAAGTGTAGAAACCTGAGGTCTGTGATGCTTTCTTTCAATTCACTTTCTGGGTCACTGCCCGAGGAGCTTTCTGAGCTCCCCATAATAACTTTTTCAGCTGAGAAGAATCAGCTCAATGGGCCTTTGCCTTCTTGGCTAGGAAAGTGGACCAGTATTGATTCTCTATTGCTTTCTGGCAACCACTTTTCTGGGGCAATTCCACCTGAGCTTGGGAATTGCTCAGTCATGGAGCACCTTAGTTTGAGCAGCAACTTGTTGACGGGTCCCATACCTGAGGAGCTTTGTAATGCTGCCTCACTTTTGGAGATTGATCTTGATGACAACTTTCTTTCTGGTACAATTGAGAAAGCATTTGTCGAATGTAAGAACCTTACCGAGTTGGTTTTGATGAACAATCAGATTGTTGGTTCTATACCACAGTACCTTTCAGAGCTTCCCTTGATGGTGCTGGACCTAGACTCCAACAATTTTAGTGGAAAAATACCTTCCAGTCTGTGGAATTCATCAACCATGATGGAATTCTCTGCTGCTAATAACCTTTTGGAGGGTTCTCTTCCTGCGGAGATTGGGAATGCAGTTATTCTAGAGAGGCTAGTTCTTAGCAATAATCTACTGACAGGTTCTATACCTAAGGAAATTGGAAGTCTCACAAGTCTTTCAGTTATTAATCTGAATGGAAATATGCTTGAAGGGAATATTCCAACTGAACTTGGTGACTGCCTTTCCCTTACTACATTGGACCTTGGAAACAATCAACTCAATGGGTCTATTCCTGAGAAACTGGTGGACCTAAGCCAATTACAATGCCTGGTTCTTTCTCACAATAATCTGTCTGGGTCTATTCCTGCCAAGCAATCTTCATATTTTCGACAACGTACCATCCCTGATTTGAGCTTTGTTCAACACCTTGGTGTATTTGATCTTTCTCACAATAGATTGTCTGGCACCATACCTCATGAATTGGGGAATTGTGTAGTGGTTGTGGATCTATTAGTCAGCAACAACATGCTTTCTGGGAGCATTCCAGGATCACTCTCACGCTTGACAAATCTTACAACTTTGGATTTGTCTGGCAACTTGTTGTCAGGTTCCATTCCACCAGAACTTGGAGATGCCCTCAAACTCCAGGGTTTATATCTGGCACAGAATCAACTCTCGGGTACCATCCCTGGAAGTTTTGGAAACTTGAGTAATTTGGTGAAGCTGAATTTGACAGGAAATAAGCTGTCTGGTCCAATTCCAATTAGTTTTGGGAACATGAAGGAGTTGACACACTTGGATTTGAGCTGTAACGAGCTCAGTGGCGAGCTTCCACCCTCTCTGTCAGGCGTGCAAAGCCTAGTTGGTCTTTACGTGCAGAAGAACAGGCTTTCTGGCCAAGTAGGGGAGCTCTTCTCAAACTCCATGACATGGAGGATTGAGACAATGAATTTAAGTGATAATTGTTTCAATGGGAACTTGCCACGATCTTTGGGGAATCTTTCGTCCTTGACAAATCTGGATCTTCATCGAAATATGTTGACCGGAGAGATTCCTTTAGACCTTGGGAATCTAATGCAACTGGAGTATTTTGATGTTTCAGGTAATAAGCTATCTGGAAAGATTCCAGAGAAGTTATGCAGCCTAGTTAATCTGAATTACCTAGACTTGTCTCAAAACAGATTGGAGGGGCCTATACCCAGAAGTGGTATTTGCCAGAACCTATCGAGAGTTAGATTTGTGGGGAACATAAATCTTTGTGGCCAGATGTTGGGTATCAAGTGTCAGGTCAAAAGCATTGGTAGATATTCATTGTGTAATGTATTGCGGCTTGCTGAAATTGCCATTCCAGTCATATTAATAACTCTAAGCATTGCTTTTGTTCTACATAGATGGATTAGCAGGAAGCAAAATGATCCTGAGGAATTTGAGGAGCGTAAACTCAACAGTTATCTGGATCAAAATCTTTATTTCTTGAGCAGTAGCAGATCAAAGGAACCTTTGAGTATCAATATAGCAATGTTTGAGCAGCCTCTTATGAAATTAACTTTGGTTGATATCCTTGAAGCTACTGACAACTTCAGCAAGACAAATATAATTGGAGATGGAGGTTTTGGAACTGTGTACAAGGCCACTTTACCTAACGGAAAAACAGTTGCTGTGAAGAAGCTTAGTGAAGCTAAAACGCAGGGTCATCGTGAGTTCATGGCTGAAATGGAAACCTTGGGCAAGGTGAAGCATCAAAATCTTGTTGCATTGCTGGGATATTGCTCAATTGGTGAGGAGAAACTCCTTGTTTACGAATATATGGTAAATGGGAGCTTAGATCTTTGGTTGAGAAATAGGACTGGAGCCCTTGAAATCCTTGACTGGAACAAACGTTACAAAATTGCAACTGGTGCAGCTCGAGGATTAGCTTTCCTTCATCATGGTTTCATACCCCACATCATTCACAGGGATGTTAAGGCTAGTAACATTTTACTCAATGAAGATTTTGAACCGAAAGTTGCAGACTTCGGACTGGCAAGACTGATCAGTGCCTGTGAGACTCATATCACCACCGATATTGCTGGAACATTTGGTTACATCCCACCAGAGTATGGACAGAGTGGGAGGTCCACAACAAGAGGAGATGTTTATAGTTTTGGTGTCATCTTACTTGAACTGGTGACTGGAAAAGAGCCAACTGGACCAGATTTTAAAGAGATTGAAGGTGGGAACTTGGTTGGATGGGTTAGTCAGAAGATCAAGAAGGGGCAGGCTGCTGATGTTCTTGATCCAACAGTTCTTGACGCAGATTCAAAGCAGATGATGCTTCAAATGCTGCAGATTGCTTGTGTATGCCTTTCTGATAATCCTGCAAACAGGCCTACCATGCTGCAAGTACACAAATTCTTGAAGGGGATGAAAGGAGAGTAG 3813 0.4419 MAVPFNLVLSYFVVFHFLCAIADYSGQNPEKISLLSFKNGLQNPHVLASWHPSTPHCNWVGVTCQLGRVTSLSLPSRYLRGTLSSSLFSLSSLTVLNLDDNQFSGEISGELAELVQLETLRLGSNSFAGKIPPELSLLTKLRTLDLSGNALTGELPGSIGNLTRLQFLDLSNNLLSGYLPKTLFTGTLSLISVDISNNSFSGALPPGIGNWRNLTALYVGINKLSGTLPKEIGELSKLEVLYSPSCFIEGPLPEEMAKLKSLTKLDLSYNPLRCSIPKFIGKLLNLKILNLVFAQLNGSVPAELGKCRNLRSVMLSFNSLSGSLPEELSELPIITFSAEKNQLNGPLPSWLGKWTSIDSLLLSGNHFSGAIPPELGNCSVMEHLSLSSNLLTGPIPEELCNAASLLEIDLDDNFLSGTIEKAFVECKNLTELVLMNNQIVGSIPQYLSELPLMVLDLDSNNFSGKIPSSLWNSSTMMEFSAANNLLEGSLPAEIGNAVILERLVLSNNLLTGSIPKEIGSLTSLSVINLNGNMLEGNIPTELGDCLSLTTLDLGNNQLNGSIPEKLVDLSQLQCLVLSHNNLSGSIPAKQSSYFRQRTIPDLSFVQHLGVFDLSHNRLSGTIPHELGNCVVVVDLLVSNNMLSGSIPGSLSRLTNLTTLDLSGNLLSGSIPPELGDALKLQGLYLAQNQLSGTIPGSFGNLSNLVKLNLTGNKLSGPIPISFGNMKELTHLDLSCNELSGELPPSLSGVQSLVGLYVQKNRLSGQVGELFSNSMTWRIETMNLSDNCFNGNLPRSLGNLSSLTNLDLHRNMLTGEIPLDLGNLMQLEYFDVSGNKLSGKIPEKLCSLVNLNYLDLSQNRLEGPIPRSGICQNLSRVRFVGNINLCGQMLGIKCQVKSIGRYSLCNVLRLAEIAIPVILITLSIAFVLHRWISRKQNDPEEFEERKLNSYLDQNLYFLSSSRSKEPLSINIAMFEQPLMKLTLVDILEATDNFSKTNIIGDGGFGTVYKATLPNGKTVAVKKLSEAKTQGHREFMAEMETLGKVKHQNLVALLGYCSIGEEKLLVYEYMVNGSLDLWLRNRTGALEILDWNKRYKIATGAARGLAFLHHGFIPHIIHRDVKASNILLNEDFEPKVADFGLARLISACETHITTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVTGKEPTGPDFKEIEGGNLVGWVSQKIKKGQAADVLDPTVLDADSKQMMLQMLQIACVCLSDNPANRPTMLQVHKFLKGMKGE 1270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2967g00004 1270 Gene3D Ribonuclease Inhibitor 185 334 IPR032675 -
Gabi2967g00004 1270 Gene3D Ribonuclease Inhibitor 335 594 IPR032675 -
Gabi2967g00004 1270 Gene3D Ribonuclease Inhibitor 595 896 IPR032675 -
Gabi2967g00004 1270 Gene3D Transferase(Phosphotransferase) domain 1 1068 1270 - -
Gabi2967g00004 1270 Gene3D Phosphorylase Kinase; domain 1 955 1067 - -
Gabi2967g00004 1270 SUPERFAMILY L domain-like 338 591 - -
Gabi2967g00004 1270 FunFam serine/threonine-protein kinase BRI1-like 2 1068 1270 - -
Gabi2967g00004 1270 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 601 897 - -
Gabi2967g00004 1270 SUPERFAMILY RNI-like 71 392 - -
Gabi2967g00004 1270 SMART LRR_sd22_2 677 703 - -
Gabi2967g00004 1270 SMART LRR_sd22_2 653 668 - -
Gabi2967g00004 1270 SMART LRR_sd22_2 545 571 - -
Gabi2967g00004 1270 SMART LRR_sd22_2 847 875 - -
Gabi2967g00004 1270 SMART LRR_sd22_2 799 820 - -
Gabi2967g00004 1270 SMART LRR_sd22_2 138 164 - -
Gabi2967g00004 1270 SMART LRR_sd22_2 259 278 - -
Gabi2967g00004 1270 SMART LRR_sd22_2 426 449 - -
Gabi2967g00004 1270 SMART LRR_sd22_2 725 751 - -
Gabi2967g00004 1270 FunFam Leucine-rich repeat receptor protein kinase EMS1 335 594 - -
Gabi2967g00004 1270 PRINTS Leucine-rich repeat signature 548 561 - -
Gabi2967g00004 1270 PRINTS Leucine-rich repeat signature 847 860 - -
Gabi2967g00004 1270 SMART LRR_typ_2 259 283 IPR003591 -
Gabi2967g00004 1270 SMART LRR_typ_2 799 823 IPR003591 -
Gabi2967g00004 1270 SMART LRR_typ_2 307 331 IPR003591 -
Gabi2967g00004 1270 SMART LRR_typ_2 701 724 IPR003591 -
Gabi2967g00004 1270 SMART LRR_typ_2 162 186 IPR003591 -
Gabi2967g00004 1270 SMART LRR_typ_2 605 629 IPR003591 -
Gabi2967g00004 1270 SMART LRR_typ_2 90 114 IPR003591 -
Gabi2967g00004 1270 SMART LRR_typ_2 569 593 IPR003591 -
Gabi2967g00004 1270 SMART LRR_typ_2 847 872 IPR003591 -
Gabi2967g00004 1270 SMART LRR_typ_2 653 677 IPR003591 -
Gabi2967g00004 1270 SMART LRR_typ_2 725 749 IPR003591 -
Gabi2967g00004 1270 SMART LRR_typ_2 521 545 IPR003591 -
Gabi2967g00004 1270 SMART LRR_typ_2 138 161 IPR003591 -
Gabi2967g00004 1270 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 27 180 - -
Gabi2967g00004 1270 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1114 1126 IPR008271 GO:0004672|GO:0006468
Gabi2967g00004 1270 FunFam serine/threonine-protein kinase BRI1-like 2 953 1067 - -
Gabi2967g00004 1270 SUPERFAMILY Protein kinase-like (PK-like) 972 1264 IPR011009 -
Gabi2967g00004 1270 FunFam leucine-rich repeat receptor protein kinase EMS1 185 334 - -
Gabi2967g00004 1270 Pfam Leucine rich repeat 116 175 IPR001611 GO:0005515
Gabi2967g00004 1270 Pfam Leucine rich repeat N-terminal domain 28 64 IPR013210 -
Gabi2967g00004 1270 Gene3D Ribonuclease Inhibitor 27 184 IPR032675 -
Gabi2967g00004 1270 Pfam Protein tyrosine and serine/threonine kinase 995 1264 IPR001245 GO:0004672|GO:0006468
Gabi2967g00004 1270 Pfam Leucine Rich Repeat 261 283 IPR001611 GO:0005515
Gabi2967g00004 1270 Pfam Leucine Rich Repeat 728 748 IPR001611 GO:0005515
Gabi2967g00004 1270 ProSitePatterns Protein kinases ATP-binding region signature. 998 1021 IPR017441 GO:0005524
Gabi2967g00004 1270 SMART serkin_6 992 1264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2967g00004 1270 SUPERFAMILY L domain-like 598 886 - -
Gabi2967g00004 1270 ProSiteProfiles Protein kinase domain profile. 992 1264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2967g00004 1270 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 679 1265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2967g00004 Gabi-Chr2967 63599 67429 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2967g00004 30 1265 Receptor kinase-like Gene Family AT5G07280 60.306 0.0 1421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Gabi2967g00004 PK_Tyr_Ser-Thr 1.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2967g00004 - - gmx:100780446 2159.03