Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2967g00001 ATGCAAAGTTCATCTTCCTTTTCCTTCTCAACTCAAAGAAAAATGGAGGGCCATAGTGAGATGGGTCTCATTGGGGAAAATCTCGATACTAGTTTGACGGGGAGGATGAGGGACGATGAGAATGAAAGCCGTTCTGGAAGTGACAACTTTGAAGGCTTATCTGGTGATGATCAGGATGCTGGTGATGATCAGCGGCAGAGGAAGAAAAGATACCATAGACACACTCCTTACCAAATTCAAGAGCTTGAATCTTTCTTTAAGGAGTGTCCTCATCCGGATGAGAAGCAAAGGTTAGATCTTAGCAACAAACTTGGCTTGGAGAATAAGCAAGTCAAGTTCTGGTTTCAGAATCGACGGACTCAAATGAAGACCCAGCTGGAACGCCATGAGAATTTAATGCTTAGGCAGGAGAATGAGAAGCTCAGAGCTGAGAACACTTTGATGAAGGAAGCCATGTCAAATCCAATATGTAACAGCTGTGGCGGCCCGGCTATTCCTGGCCAAATTTCATTTGAGGAGCACCAGATTAGAATTGAAAATGCTCGACTAAAGGATGAATTGAACCGCATATGTTCCTTAACAAACAAGTTCCTTGGCAAGCCAATTTCATCATTGACCAGTCCCATGTCTCTCCCAACCTCAAATTCTGGTCTGGAACTTGGTATTGGAAGGAGTGGGGTTAGTGGTTCGAGCACTCTCGGCACTTCCTTGCCAATGGGACTTGATTTGGGAGATGGAGTCTTGGGAACCCAATCTGCAATGCCTGGGATTAGATCCCAAATGGGATTGATGGGAAGTGGAGTTCAGTTCGAGAGATCCATGCTTATAGATCTTGCATTGGCTGCTATGGAGGAACTAATAAAGAAGGCTCAGACAGATAGCCCTCTTTGGATTAAGAGTTTGGATGGCGAGAGGGAAATTATGAACCATGAGGAGTATGCAAGGTGTTTTTCTCCTTGTATTGGTCCAAAACCCACTGGTTATGTAACTGAAGCTACAAGAGAAACTGGGATAGTAATCATTAACAGTTTAGCCCTTGTGGAAACTTTGATGGATGCGAATCGATGGGCGGAGATGTTTCCATCTATGATTGCTAGAGCTATCAATCTTGATGTTATATCTAGTGGCATGGGCGGAACCAGAAATGGTGCTTTACAAGTGATGCATTCTGAGGTTCAATTGCTTTCACCACTGGTCCCTGTTCGTCAAGTGAGATTCCTCCGGTTTTGTAAGCAGCATGCAGAAGGCTTATGGGCTGTGGTTGATGTTTCTGTTGAGGTTGGTCATGATGCTGCTAATGCACAATCATTCATTAGCTGTAGGAGGCTTCCTTCTGGCTGTATTGTGCAGGATATGCCCAATGGTTACTCCAAGGTTACTTGGCTTGAGCATTGGGAGTATGATGAGAGTGTTATCCACCAACTTTATCGCCCATTGCTTAGTTCTGGTGTTGGATTTGGTGCTCATAGATGGATCGCCACCCTCCAAAGGCAGTGTGAAGGCTTGGCCATCCTAATGTCTTCTTCCATCTCAAGTGATGATCACACAGCCTTGAGCCAAGCTGGTCGGAGAAGCATGTTGAAGCTGGCACAACGCATGACCAGTAACTTTTGTTCCGGGGTCTGTGCTTCTTCAGCTCGCAAGTGGGATAGCCTTCATCTGGGGACTCTTGGTGATGACATGAGAGTGATGACTAGGAAAAATGTGGATGACCCAGGTGAGCCTCCAGGGATCTTGCTCAGTGCTGCAACTTCTGTTTGGATGCCGGTGTCACGGCAAAGGCTGTTTGATTTTCTTCGCGATGAACGGTTCAGAAGCCAGTGGGACATTTTGTCCAATGGTGAACCAATGCAAGAGATGGTCCATATTGCCAAAGGACAAGGTCATGGAAATTGTGTTTCTCTCCTTCGTGCTGGTGCTGTTAATGCCAATGATAGTAGCATGCTGATTCTGCAAGAAACATGGACGGATGCTTCGTGCTCGGTGGTAGTATATGCACCGGTTGATGTGCAATCCTTGAATGTGGTGATGAGTGGGGGAGATTCTGCTTATGTTGCACTCTTGCCTTCAGGTTTTGCCATTCTTCCTGATGGTCATTGCTTCGGCAGTGTTGCACCAAACAACAGTTGCAATGGTGGTGTTGGTGATGGTGACGGTGGAAGCTTGCTTACGGTTGGGTTCCAAATTCTGGTGAATAGCCTCCCAACAGCTAAGCTCACGGTGGAGTCAGTTGATACCGTGGATAACCTCATCTCATGCACCATTCAGAAGATCAAAGCTTCACTCAGAGTTGCATAA 2298 0.4608 MQSSSSFSFSTQRKMEGHSEMGLIGENLDTSLTGRMRDDENESRSGSDNFEGLSGDDQDAGDDQRQRKKRYHRHTPYQIQELESFFKECPHPDEKQRLDLSNKLGLENKQVKFWFQNRRTQMKTQLERHENLMLRQENEKLRAENTLMKEAMSNPICNSCGGPAIPGQISFEEHQIRIENARLKDELNRICSLTNKFLGKPISSLTSPMSLPTSNSGLELGIGRSGVSGSSTLGTSLPMGLDLGDGVLGTQSAMPGIRSQMGLMGSGVQFERSMLIDLALAAMEELIKKAQTDSPLWIKSLDGEREIMNHEEYARCFSPCIGPKPTGYVTEATRETGIVIINSLALVETLMDANRWAEMFPSMIARAINLDVISSGMGGTRNGALQVMHSEVQLLSPLVPVRQVRFLRFCKQHAEGLWAVVDVSVEVGHDAANAQSFISCRRLPSGCIVQDMPNGYSKVTWLEHWEYDESVIHQLYRPLLSSGVGFGAHRWIATLQRQCEGLAILMSSSISSDDHTALSQAGRRSMLKLAQRMTSNFCSGVCASSARKWDSLHLGTLGDDMRVMTRKNVDDPGEPPGILLSAATSVWMPVSRQRLFDFLRDERFRSQWDILSNGEPMQEMVHIAKGQGHGNCVSLLRAGAVNANDSSMLILQETWTDASCSVVVYAPVDVQSLNVVMSGGDSAYVALLPSGFAILPDGHCFGSVAPNNSCNGGVGDGDGGSLLTVGFQILVNSLPTAKLTVESVDTVDNLISCTIQKIKASLRVA 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2967g00001 765 SUPERFAMILY Bet v1-like 529 759 - -
Gabi2967g00001 765 MobiDBLite consensus disorder prediction 1 15 - -
Gabi2967g00001 765 Pfam START domain 278 500 IPR002913 GO:0008289
Gabi2967g00001 765 SUPERFAMILY Bet v1-like 270 501 - -
Gabi2967g00001 765 ProSiteProfiles START domain profile. 268 504 IPR002913 GO:0008289
Gabi2967g00001 765 MobiDBLite consensus disorder prediction 1 76 - -
Gabi2967g00001 765 Pfam Homeodomain 68 123 IPR001356 GO:0003677
Gabi2967g00001 765 CDD homeodomain 67 125 IPR001356 GO:0003677
Gabi2967g00001 765 ProSitePatterns 'Homeobox' domain signature. 100 123 IPR017970 GO:0000981|GO:0006355
Gabi2967g00001 765 ProSiteProfiles 'Homeobox' domain profile. 65 125 IPR001356 GO:0003677
Gabi2967g00001 765 SMART START_1 277 501 IPR002913 GO:0008289
Gabi2967g00001 765 FunFam Homeobox-leucine zipper protein HDG1 54 141 - -
Gabi2967g00001 765 SMART HOX_1 66 129 IPR001356 GO:0003677
Gabi2967g00001 765 Coils Coil 119 154 - -
Gabi2967g00001 765 SUPERFAMILY Homeodomain-like 54 125 IPR009057 -
Gabi2967g00001 765 FunFam Homeobox-leucine zipper protein GLABRA 2 277 500 - -
Gabi2967g00001 765 MobiDBLite consensus disorder prediction 32 46 - -
Gabi2967g00001 765 CDD START_ArGLABRA2_like 272 500 - -
Gabi2967g00001 765 Gene3D - 55 141 - -
Gabi2967g00001 765 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 64 762 IPR042160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2967g00001 Gabi-Chr2967 10919 15708 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2967g00001 15 762 Homeobox Transcription Factor Family AT3G61150 61.376 0.0 912
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gabi2967g00001 START 1.8e-48 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2967g00001 K09338 - gmx:100785102 1333.55