Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2963g00025 ATGGACATGTACGGTTCCATTTCCACCTCTCCAGATTGCTTGCGAATTGATGACCTTCTTGACTTCTCCAACCACCCTCTCACCACCGCTGATTCCGACCACCACCAACACCTTCCTCCGCCGCAACACCCTTTCACCCACCAATTCTCCGACGACTCCAATTTCTTTACCAATTTCCCTTCCATCCCCAGCGAAGAAGCAGCGGAACTCGAATGGCTTTCTCAATTCGTCGACGACACGACGTCGTTTCACGATTTCCCACCGAACCAGATCATGCCAATGGGATCATCTCACGCGACGTCGTTTCTTAACACTAACGATATTAGTAATAAGAATAATTCCAAATCATCGTCGGGCGCTCCGGTCACCGGAAAATCAAGATCGAAGAGGGAGGCGAACGGGACCGGAGAGGCAGGGGTTCAGAGGTGCAGCCACTGCGCATCGGAGAAAACGCCGCAATGGCGAACGGGACCGCTGGGGCCGAAGACGCTGTGCAACGCTTGTGGTGTGAGGTTCAAATCGGGTCGGCTCGTACCCGAATACCGACCCGCATCTAGCCCCACATTCGTGCTGACTCAGCACTCCAACTCGCATCGGAAAGTCATGGAGCTCCGTCGCCAGAAGGAGCTGCTCCGTCAACAACACCAGCACTAG 654 0.5443 MDMYGSISTSPDCLRIDDLLDFSNHPLTTADSDHHQHLPPPQHPFTHQFSDDSNFFTNFPSIPSEEAAELEWLSQFVDDTTSFHDFPPNQIMPMGSSHATSFLNTNDISNKNNSKSSSGAPVTGKSRSKREANGTGEAGVQRCSHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRLVPEYRPASSPTFVLTQHSNSHRKVMELRRQKELLRQQHQH 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2963g00025 217 PIRSF Txn_fac_GATA_plant 1 141 IPR016679 GO:0003677|GO:0005634|GO:0045893
Gabi2963g00025 217 PIRSF Txn_fac_GATA_plant 131 217 IPR016679 GO:0003677|GO:0005634|GO:0045893
Gabi2963g00025 217 Gene3D - 135 214 IPR013088 GO:0006355|GO:0008270
Gabi2963g00025 217 SMART GATA_3 137 187 IPR000679 GO:0006355|GO:0043565
Gabi2963g00025 217 CDD ZnF_GATA 142 189 IPR000679 GO:0006355|GO:0043565
Gabi2963g00025 217 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 142 201 - -
Gabi2963g00025 217 ProSitePatterns GATA-type zinc finger domain. 143 168 IPR000679 GO:0006355|GO:0043565
Gabi2963g00025 217 PANTHER GATA TRANSCRIPTION FACTOR 126 214 - -
Gabi2963g00025 217 MobiDBLite consensus disorder prediction 94 141 - -
Gabi2963g00025 217 FunFam GATA transcription factor 133 217 - -
Gabi2963g00025 217 MobiDBLite consensus disorder prediction 94 124 - -
Gabi2963g00025 217 Pfam GATA zinc finger 143 176 IPR000679 GO:0006355|GO:0043565
Gabi2963g00025 217 ProSiteProfiles GATA-type zinc finger domain profile. 137 173 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2963g00025 Gabi-Chr2963 400563 401559 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2963g00025 38 216 C2C2-Gata Transcription Factor Family AT2G45050 51.152 7.89e-61 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gabi2963g00025 GATA 7.3e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2963g00025 - - gmx:100803262 280.026