Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2960g00001 ATGGATCCGCCACCCCTCTCTGCCGCCACCGTGGCTCCAAACCACCCTGACTCGGTGGAGTCCTCTCCACGTTCTCGCATTGTTGAAACATACAGTGATGAGCCTCTACCAGCTGTTCCTGGTGGCAAGCTCCGCCTCATGTGTAGCTATGGTGGCCACATCATGCCACGGCCACATGACAAGTCACTCTGCTATGTCGGCGGCGACACCCGAATCGTGGTGGTGGACCGCCACTCCTCCCTGAAAGACCTCTGTGCACGGCTCTCACGCACTATCCTTAATGGAAGACCCTTTACTCTTAAGTACCAGTTACCAAATGAAGACCTTGACAACCTCATCACTGTCACCACTGATGAAGACCTTGATAACATGATTGAAGAGTATGATCGTATAGCTCAAAAGCCTTCACCTTCACGCCTCAGGGTGTTCCTGTTCTTCACCAAACCAGAAACCACTGTTTCAATGGGGTCACTCCTTGATGAGGTTAAGTCAGAGACATGGTTCGTTGATGCACTTAACAACTCAGGGATGCTGTCAAGGGTCGTGTCAGATTCAGCTGCAGGGGATTCTTTTGTGAACCTTGATAGTGTTCCTGCTTGTGGTTCAAGCAACAACTTGGAGGCTCAAGGTGTTGTTGTAGAGTCTTTGACTCTGAATGATAGTGACAACAAGGTTAAGAATTTGCATGATGTTGTGAATTCATTCCCTGGTTCACCTGTGGTGGAGAATACCTCTTCTTCATCTTCTTCTTCTTCTCCTTCAATGGCTAATCTGCCTCCGATTCGGGTTCGTGTTGATGACAATGGTAGTAGTAGGCTTCAGCAGCAAGAGAAGAGGGTGGGGGTGGTGGAGGATCAGTTTGCTCAGATGAACTTTGCTGCAAGTGGTGTGATGAAGCATGATGACGGGTATGTTGTTGTTTCTTCTGCTGTGGCTATGCCTGCAATTCCTGCAGCTGTGACTATGACTTCAGCTGGGGTGGTTAGTACAAGTGATAATATGAATAGGGTTGTCTCTGATGATGAGAGATCAGATCATGGTGCACCAGCTGGGTTTAGGAAACCCCCTTTACCATTGCAGCTTGTGCAACCAAAGTCTAGTGGTGGCTTGAGTTTGCCTTCTCCAGATTCAGTTACAAGTGATAGTAGTATTGCATCTACAAATTCTTTCTCCAAGATTGTTTACTATCAAGAACAAGTCCAAGCTGCACCTGTTGACACCAAAGCTCTTGCTTTGCCAAATGCCAAGAGTGAAATATCTGATCAAATCCCTGGACTACAAAGGGAACAAGTTCAGGATTCTGGTTACATGTTACCCCCACAATTGGATCAAAATCAGCAATTCCATCACCAGCAGCAGCAGCAACAGCAGCAATTTGTCCATGCCAACACCCACTACATCCACCACCCTACAGCCACAGGTCCAGTGCAAGTGTCATCCTACTACCCAGTTTATGCTTCACCATCACAGAATCAACTTCACCATCCTATTGGTCAGCAGCAATACCCAGTTTATGTAATGCCAGTTGGACATACACAACAATACAACATGGCAATGCAACCCAATATAGCTGACTCAAATGTGGTAGCCTCAGGAAGACCACTAATACCCCAAAGTGCTAATGTCTCAACAGCATACAAGGATGGCACTCCACCTATTTACCCCACTAAGCCAGCTTCCCCTACTATATCTGAGGTAACTCCAAGTGTTTACAAAACTCCTGTGGCATCAAATCCTGCATTTGTTCAAATACCTTCCAATCAATTTCAGCAACAGTATGTGGGTTTGCCTCAATTCCATCATCCACCTCAGCCTATTTCTGTAACTCCCTCTGGTGCTACTAATTATGGTTATGACTATGGTGGCCTTGTGCAAGACCAAGCATACTACACACAACAACAACAACAAACTAATGCTCCATTGCTTCCTCAGTACCAATCCATGACCCCAGCAGCAGCTGCTGCAGCACTATCAGATGCTTCAAAACAATATCCTGCAGACAATAATATTCAGCAGCAAAATAGAAGTTCACAGCCAGTATAA 2043 0.463 MDPPPLSAATVAPNHPDSVESSPRSRIVETYSDEPLPAVPGGKLRLMCSYGGHIMPRPHDKSLCYVGGDTRIVVVDRHSSLKDLCARLSRTILNGRPFTLKYQLPNEDLDNLITVTTDEDLDNMIEEYDRIAQKPSPSRLRVFLFFTKPETTVSMGSLLDEVKSETWFVDALNNSGMLSRVVSDSAAGDSFVNLDSVPACGSSNNLEAQGVVVESLTLNDSDNKVKNLHDVVNSFPGSPVVENTSSSSSSSSPSMANLPPIRVRVDDNGSSRLQQQEKRVGVVEDQFAQMNFAASGVMKHDDGYVVVSSAVAMPAIPAAVTMTSAGVVSTSDNMNRVVSDDERSDHGAPAGFRKPPLPLQLVQPKSSGGLSLPSPDSVTSDSSIASTNSFSKIVYYQEQVQAAPVDTKALALPNAKSEISDQIPGLQREQVQDSGYMLPPQLDQNQQFHHQQQQQQQQFVHANTHYIHHPTATGPVQVSSYYPVYASPSQNQLHHPIGQQQYPVYVMPVGHTQQYNMAMQPNIADSNVVASGRPLIPQSANVSTAYKDGTPPIYPTKPASPTISEVTPSVYKTPVASNPAFVQIPSNQFQQQYVGLPQFHHPPQPISVTPSGATNYGYDYGGLVQDQAYYTQQQQQTNAPLLPQYQSMTPAAAAAALSDASKQYPADNNIQQQNRSSQPV 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2960g00001 680 MobiDBLite consensus disorder prediction 239 273 - -
Gabi2960g00001 680 ProSiteProfiles PB1 domain profile. 43 145 IPR000270 GO:0005515
Gabi2960g00001 680 MobiDBLite consensus disorder prediction 364 383 - -
Gabi2960g00001 680 MobiDBLite consensus disorder prediction 662 680 - -
Gabi2960g00001 680 PANTHER OS05G0427100 PROTEIN-RELATED 15 472 - -
Gabi2960g00001 680 MobiDBLite consensus disorder prediction 337 383 - -
Gabi2960g00001 680 MobiDBLite consensus disorder prediction 239 257 - -
Gabi2960g00001 680 Gene3D - 63 146 - -
Gabi2960g00001 680 MobiDBLite consensus disorder prediction 654 680 - -
Gabi2960g00001 680 Pfam PB1 domain 59 145 IPR000270 GO:0005515
Gabi2960g00001 680 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 63 147 - -
Gabi2960g00001 680 SMART PB1_new 58 147 IPR000270 GO:0005515
Gabi2960g00001 680 SUPERFAMILY CAD & PB1 domains 59 156 - -
Gabi2960g00001 680 CDD PB1_UP2 47 145 - -
Gabi2960g00001 680 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2960g00001 Gabi-Chr2960 10844 13181 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2960g00001 43 174 MAP Kinase Kinase Kinase AT5G57610 44.776 9.77e-27 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2960g00001 - - var:108343763 885.174