Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2955g00018 ATGATGAGAAACTCAGAGCCAAACCATGTGGGTATGGAGATAGAGGCAAGCAAACCAGCAGAGACAACACTGCCTGGTTTGAGCCCTCTAAGTGAGACCCTTTGGAGGAAGAAGACAAACACAGAATTCATTGGAGATGTATCAGCTAGGCTCACTTGGAAGGATTTGACTGTGATGGTCACTCTCAGCAATGGAGAGACCCAAAACGTTTTGGAGGGTCTAACTGGATATGCTGAACCTGGAACCTTCACAGCACTCATGGGTCCTTCAGGTTCAGGCAAATCTACTCTGCTTGATGCTCTGTCTAGTCGTTTAGCAGCAAATGCCTTTCTCTCAGGCACCATCCTCCTCAATGGTCGCAAAGCCAAGCTCTCATTTGGCACTGCAGCTTATGTGACACAAGATGACAACTTGATTGGTACACTAACGGTACGAGAAGTGATTTCTTATTCAGCACGTCTGCGACTGCCTAATGAGATGGCATGGTCAGATAAGCGAGCCCTGATTGAGAGTACCATTGTAGAGATGGGTCTTCAGGATTGTGCTGATACAGTGATTGGGAACTGGCATTTGCGTGGGATAAGTGGAGGAGAGAAGAGAAGGGTTAGCATTGCCTTGGAAATCTTGACCAGGCCTAGATTGCTTTTCCTTGATGAGCCCACTAGTGGACTTGACAGTGCTTCGGCATTCTTTGTGACTCAGACATTACGAGCCCTGGCAAGGGATGGACGAACTGTGATAGCTTCTATTCATCAGCCTAGCAGTGAAGTGTTCGAACTATTTGACCAATTGTACTTGCTTTCAGGTGGCAAAACTGTTTATTTTGGCCACGCTTCCGAAGCATACGAGTTCTTTGCACAAGCTGGATTTCCATGCCCTGCTTTGAGGAACCCATCAGATCATTTCCTTAGGTGCATCAATCGTGACTTTGACAAAGTCAAGGCCACTCTTAAAGGGTCCACCAAACTGAGGTTTGAGGGAAGTGACGATCCCCTTGACAAGATCACTACTGCTGAAGCTACCAGAACTCTTATTGACTACTATCGAACTTCTCTGCATTCTTATGCTGCAACACAAAAAGTGGATGAGATATCCAACGTAAAGGGAACCGTGCTTGAAGCAGGAGGAAGTCAGGCTAGTTTCTTGATGCAGTCTTACACCTTAACCAAACGCTCATTCACCAACATGTCAAGGGATTTTGGTTACTACTGGCTTAGGCTTGTAATCTATATTGTAGTCACCATCTGCATTGGAACCATTTATTTTAACGTGGGGACGGGCTACACCTCAATTCTGGCTAGGGGATCGTGTGCATCTTTTGTCTTCGGTTTTGTCACCTTCATGTCAATTGGTGGATTCCCTTCATTTGTTGAAGACATGAAGGTTTTCCAAAGAGAGAGGCTTAATGGCCATTATGGGGTCACCGCATTTGTCATAAGCAACACATTATCTGCAACGCCCTTCCTAATATTGATAACTTTTCTCTCTGGAACTATCTGTTACTTCATGGTTCGCTTGCATCCTGGCTTTTGGCATTACCTGTTCTTTGTCTTGTGCCTTTATGCCAGCGTTACAGTGGTTGAAAGCTTAATGATGGCCATTGCCAGCATTGTCCCCAACTTCCTCATGGGTATCATAATTGGAGCTGGGATTCAGGGCATATTCATGTTGGTCTCTGGCTTCTTTAGGCTCCCACATGATATCCCAAAGCCAGTTTGGCGCTACCCAATGTCATATATCAGTTTCCACTTCTGGGCATTACAGGGACAATACCAGAATGATCTGAGGGGCTTGCTATTTGACAACCAGACACCAGACCTTCCTAAGATACCTGGTGAATACATCCTGGAGTATATCTTCCAGATTGATGTGAACCGATCAAAGTGGATAAATTTATGTGTAATCTTAAGCATGATTATCATCTACCGCATTATCTTCTTCATTGTGATCAAAATCAATGAAGATGTTACACCGTGGGTTAGAGGTTATATTGCTAGGAGAAGAATGCAACACAAGAGTGGAACCCAGAATACAACTATTGCTCCTGATGTTCTCACTCAGTCCCCATCGCTGACAACCTACGTCTCGAGTCAAACAACTGGGGTTGCTCACAAAAGATAG 2121 0.4493 MMRNSEPNHVGMEIEASKPAETTLPGLSPLSETLWRKKTNTEFIGDVSARLTWKDLTVMVTLSNGETQNVLEGLTGYAEPGTFTALMGPSGSGKSTLLDALSSRLAANAFLSGTILLNGRKAKLSFGTAAYVTQDDNLIGTLTVREVISYSARLRLPNEMAWSDKRALIESTIVEMGLQDCADTVIGNWHLRGISGGEKRRVSIALEILTRPRLLFLDEPTSGLDSASAFFVTQTLRALARDGRTVIASIHQPSSEVFELFDQLYLLSGGKTVYFGHASEAYEFFAQAGFPCPALRNPSDHFLRCINRDFDKVKATLKGSTKLRFEGSDDPLDKITTAEATRTLIDYYRTSLHSYAATQKVDEISNVKGTVLEAGGSQASFLMQSYTLTKRSFTNMSRDFGYYWLRLVIYIVVTICIGTIYFNVGTGYTSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVISNTLSATPFLILITFLSGTICYFMVRLHPGFWHYLFFVLCLYASVTVVESLMMAIASIVPNFLMGIIIGAGIQGIFMLVSGFFRLPHDIPKPVWRYPMSYISFHFWALQGQYQNDLRGLLFDNQTPDLPKIPGEYILEYIFQIDVNRSKWINLCVILSMIIIYRIIFFIVIKINEDVTPWVRGYIARRRMQHKSGTQNTTIAPDVLTQSPSLTTYVSSQTTGVAHKR 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2955g00018 706 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 39 672 - -
Gabi2955g00018 706 SMART AAA_5 80 251 IPR003593 GO:0016887
Gabi2955g00018 706 Pfam ABC transporter 73 222 IPR003439 GO:0005524
Gabi2955g00018 706 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 51 294 IPR003439 GO:0005524
Gabi2955g00018 706 FunFam ABC transporter G family member 11 45 288 - -
Gabi2955g00018 706 MobiDBLite consensus disorder prediction 1 28 - -
Gabi2955g00018 706 CDD ABCG_EPDR 48 276 - -
Gabi2955g00018 706 Pfam ABC-2 type transporter 384 590 IPR013525 GO:0016020|GO:0140359
Gabi2955g00018 706 ProSitePatterns ABC transporters family signature. 194 208 IPR017871 GO:0005524|GO:0016887
Gabi2955g00018 706 Gene3D - 45 289 IPR027417 -
Gabi2955g00018 706 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 51 288 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2955g00018 Gabi-Chr2955 232527 238059 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2955g00018 81 255 Calmodulin-binding Proteins AT2G36910 33.333 8.66e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2955g00018 K05681 - gmx:100803731 1260.74