Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2955g00002 ATGGCCACCAGGCGTATGAGGGCATTCAAGCGGTGGATGAAGTCTCAGGGATTCGAATGGAGCGATGCATTGGAGTTTGTGGACACCCCAGAAGAGGGAATAGCTGTGAGAGCTTTGTGCCAATTGAAGGAAGGTGATGTTGTGGCCAAGATGCCAAAGGAAGCTTGCCTTACCATCAAGACCAGTGGGGCACGTGAGATCATTGAAGATGCTGGTTTGGATGGTCATTTGGGGTTAGCATTTGCCATCATGTATGAGAGAAGCTTGGGTGGTGACTCCCCCTGGGCTGGGTACCTTCAGCTTTTGCCTCACCAAGAGTGCTTGCCATTGGTTTGGACCCTCAATGAAGTAAACGCCCTTTTGTGTGGTACTGAGCTTCACCAGGCAGTGCAAGAAGAAAAAGCTCTTATGTATGAGGACTGGAAAGAGGATATTCTGCCCCTATTGGATTTGGCACCTTCAAAGCTTAAACCAAAATTCTTTGGTATAGAACAATACTTTGCAGCAAAAAGTCTAATTTCTTCGCGATCGTTCTCGATTGATGATTACCATGGTTTTGGCATGGTTCCCTTGGCAGATCTATTCAATCATAAAACAGGTGCTGAGGATGTACATTTCACAGCTATGTCCTCTAATTATGCATCTGACAATGACATTGATCTTAATAACAATGATGAGGGGATCATTGATGAAGAAGCATTGGCTCAAAATTCCTCTATAGATATGACTGAGTTAAATACTGCTCATGTTGAGAACTGCGTTGATGGCAACTCAGAGTATTCTTCAGATATGGAGGGTGATCCTTCAATGCTGGAGATGATCATGATAAAAGATGTCAACAGTGGAGCTGAGGTATTTAATACGTACGGGTTATTGGGTAATGCTGCTTTGCTTCATAGATATGGATTTACTGAGCAAGATAATCCCTATGATATTGTGAACATTGATTTGGAACTGGTACTTCAGTGTTGTTCTTCTTTGTTTTCTGACCGCCACAGTAGAGCAAGAGTCTCCCTTTGGAGAAGGTTAGGCTATTCAGCATGTGGCAGCCAAAACTCTGAATATTTTGAGATCTCATTTGATGGAGAACCACAAATTGAACTTGTCATTTTATTATACATCATGTTATTACCAGATAATGCATACCAAAAGTTAGACCTATCAGTATCAATTGCTGGAAATTATCATGAATCAAGTGAAACCATTCTTTTGGATGATAATATCTTACCAAAGAAAGCATCTAAAGTGAGCACGAAACTCTTGCTGACTAAAAAAGTTTGTTATGCTCTGTTGTCACTCGTTGATATGAGGGAGAGTCTCTATGGTTTAGAATCAATAGAAGATGATATTGCAGGATTGGGAAGGTGTAGTTTAGTTAGAGATAGAAAGCTGTATCATTCTCTGATGCTGCGCATCAGTGAAAGGAAGATCCTTCAAAAGTTCAGAAACTATGCTTCACAACCATTTAAAATCACTAATCATAGTTCTGCGAGGAAGAAGTTGAAAAGGACAACAAAGAGTAAGAGTTGA 1530 0.4092 MATRRMRAFKRWMKSQGFEWSDALEFVDTPEEGIAVRALCQLKEGDVVAKMPKEACLTIKTSGAREIIEDAGLDGHLGLAFAIMYERSLGGDSPWAGYLQLLPHQECLPLVWTLNEVNALLCGTELHQAVQEEKALMYEDWKEDILPLLDLAPSKLKPKFFGIEQYFAAKSLISSRSFSIDDYHGFGMVPLADLFNHKTGAEDVHFTAMSSNYASDNDIDLNNNDEGIIDEEALAQNSSIDMTELNTAHVENCVDGNSEYSSDMEGDPSMLEMIMIKDVNSGAEVFNTYGLLGNAALLHRYGFTEQDNPYDIVNIDLELVLQCCSSLFSDRHSRARVSLWRRLGYSACGSQNSEYFEISFDGEPQIELVILLYIMLLPDNAYQKLDLSVSIAGNYHESSETILLDDNILPKKASKVSTKLLLTKKVCYALLSLVDMRESLYGLESIEDDIAGLGRCSLVRDRKLYHSLMLRISERKILQKFRNYASQPFKITNHSSARKKLKRTTKSKS 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2955g00002 509 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 5 412 - -
Gabi2955g00002 509 SUPERFAMILY SET domain 4 207 IPR046341 -
Gabi2955g00002 509 CDD SET_LSMT 23 304 - -
Gabi2955g00002 509 Gene3D - 306 495 IPR036464 -
Gabi2955g00002 509 SUPERFAMILY SET domain 265 308 IPR046341 -
Gabi2955g00002 509 PIRSF RMS1_SET 1 488 IPR011383 GO:0016279|GO:0018026
Gabi2955g00002 509 Pfam SET domain 33 290 IPR001214 GO:0005515
Gabi2955g00002 509 Gene3D set domain protein methyltransferase, domain 1 2 303 - -
Gabi2955g00002 509 ProSiteProfiles SET domain profile. 22 290 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2955g00002 Gabi-Chr2955 13895 17883 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2955g00002 1 503 NAC Transcription Factor Family AT3G56570 56.098 0.0 539
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gabi2955g00002 SET 7.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2955g00002 - K05302 gmx:100794971 795.038