Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2954g00001 ATGGAAGGATCCTTACTTGTGAGAAAAGGAGCATGGGGTAAAGTGGAAGATGACCTTCTTAGGGCATGTGTGCAACAATACGGGGAAGGAAAATGGCACCTAGTTCCTGCAAGAGCAGGCTTGAACAGATGCCGCAAAAGCTGCAGATTGCGGTGGTTGAATTATCTAAAACCAAATATCAAGCGAGGAGGGTTCACTGAGGACGAAATTGATATGATGACAAGATTGCACAGACTTTTGGGAAACAGATGGTCCCTGATTGCTGGAAGGCTTCCTGGAAGAACTCCTAACGATGTGAAAAACTACTGGAATACCTATATTCGAAGGAGGGTATCCTCTCATAAGGAAGATATCAATGCAAAGCCTAAGGAAATAGTGAAACCTCATCTTGTGATAAAGCCTCAACCTCTAACTTTCTCTAGAACTTCGCCCTGGTTGACAAAGAGATTCATTAGCGAAGATCAAAGCAAGGCCAAAGAGTGCAGTATCCAAGCACATGGACAAAACGACAAGGGAGACAATACCGACAACAAATGCAATAATTGTCGGGATCATTGGTGGGAAACAGTGATGGACGACAAGGGAGGCAATGCAGAGAACGACAAATGCTGCTTGGGTGACAAAGATGGGAAGCTCATGAAAGACCCTAATTGGAATGAGGAGCTTTCTTCATTGACCATAGATGCTGGGGACTTTCTTATAGAAGATCAATGTTGGAGTGATTTTCTTCTTGATGTCAATTTGTGGGATTCATGA 756 0.4352 MEGSLLVRKGAWGKVEDDLLRACVQQYGEGKWHLVPARAGLNRCRKSCRLRWLNYLKPNIKRGGFTEDEIDMMTRLHRLLGNRWSLIAGRLPGRTPNDVKNYWNTYIRRRVSSHKEDINAKPKEIVKPHLVIKPQPLTFSRTSPWLTKRFISEDQSKAKECSIQAHGQNDKGDNTDNKCNNCRDHWWETVMDDKGGNAENDKCCLGDKDGKLMKDPNWNEELSSLTIDAGDFLIEDQCWSDFLLDVNLWDS 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2954g00001 251 Pfam Myb-like DNA-binding domain 62 106 IPR001005 -
Gabi2954g00001 251 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Gabi2954g00001 251 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 56 IPR017930 -
Gabi2954g00001 251 CDD SANT 11 56 IPR001005 -
Gabi2954g00001 251 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Gabi2954g00001 251 SMART sant 8 58 IPR001005 -
Gabi2954g00001 251 SMART sant 61 109 IPR001005 -
Gabi2954g00001 251 Gene3D - 64 128 - -
Gabi2954g00001 251 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 7 177 - -
Gabi2954g00001 251 CDD SANT 65 107 IPR001005 -
Gabi2954g00001 251 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 111 IPR017930 -
Gabi2954g00001 251 Gene3D - 9 61 - -
Gabi2954g00001 251 FunFam Myb transcription factor 9 61 - -
Gabi2954g00001 251 SUPERFAMILY Homeodomain-like 8 103 IPR009057 -
Gabi2954g00001 251 ProSiteProfiles Myb-like domain profile. 8 56 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2954g00001 Gabi-Chr2954 18953 20524 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2954g00001 7 140 MYB Transcription Factor Family AT1G66370 58.865 7.83e-55 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi2954g00001 Myb_DNA-binding 4.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2954g00001 - K16166 gmx:100306270 312.768