Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2939g00002 ATGCCCACTTCTCTAAAATTTTCACTTCTCTTGACTATGCTGTTTATTCTAGGTAACACCGTGAAAGGCAAGAATCAGTGCACAGATAACTGTGGAAGCGTTCATATTCAATTTCCATTTTATCTCAGAAATAGCAAGTTGAATCACACAACCGGTTATCCTACTGGGTTTGATCTATCATGTACTGATAAATACGAGACAGTGCTGGAGATACCTACTGTTCCGGTAAAATTGTTTGTCAAAGACATAGATTACAAATCCCAACAAATTGAAATCTATAACCCTCAAAGTTGTCTTTCTAGTCAGCTTTTAACACTTGGAAACTCATCAATTTCTCCATTCCAATTCCAATCATCTGGCCTGCGTAATGTTTCCTTCTTCCATTGCAGCAATTCAATGTCCTGCCCTATTTTGCAACTTGGATCTGACGATGACTTCATTGATCCTGAGATAATATCTTGCACCAAGGTCAGTGATGTTCTTTCCGTCGATTGGCAGTTGAGTGATGATTCCAAGAACACTTTGTTTATGGAATGGTTTAATCCAAACTGTAGTTACTGTGAAGCACGAGGGCAGAAATGTAAATGGAAGAATGGTACCAAAGGTGAAACTGAATGTTTCATTTGCCGAACAAACACACTTCCAACATCAACTGTTGTACTAATTTCCGCAGGGGCAATAATTGGGTCAATGCTTTTGCTGCTATTGGTCATTGCATTGTTTCGCGTTTATCGCTATTATAAGATGAAGGGAGAAGACCAGACTAGGATTGAAAGATTCTTGGAGGATTATAGGGCAATGAAGCCTACGAGATTCACTTATGCTGATATTAAGAGAATCACAAATGGTTTTAAGGAAAGCTTAGGGGAAGGAGCTCATGGAGCAGTTTTCAAAGGCATGCTTTCGCAAGAGATTCTTGTTGCTGTGAAGATACTCAATGACACACAGGTAGATGGGAAGGATTTCATAAATGAAGTTGGAACCATGGGAAAAATTCATCATGTCAATGTTGTTCGCTTGCTTGGATTCTGTGCTGATGGTTTCCACCGTGCTCTTGTCTATGATTTCTTTCCCAATGGTTCTCTGCAGAATTTCTTAGCTCCACCAGATAACAAGGATGTTTTCCTTGGTTGGGTGAAGTTGCAACAAATTGCTGTTGGTGTTGCCAAAGGACTTGAGTATCTCCACCTAGGTTGTGATCATAGAATACTTCACTTTGACATCAATCCCCACAATGTGCTACTAGACGACCACTTTTCTCCTAAAATTACTGATTTTGGACTTGCCAAGTTGTGTCCCAAAAATCAGAGCACTGTATCTATGACTGCAGCTAGAGGAACCTTGGGCTACATTGCCCCTGAAGTTTTCTCAAGAAACTTTGGTAATGTGTCTTATAAGTCTGACATATACAGCTATGGAATGTTGCTGCTGGAGATGGTTGGAGGAAGAAAGAATACAAATGTATCGGCCGAGGAAACCTTCCAAGTTCTATATCCGGAATGGATCCATAATTTGCTTGAAAGCAGAGACGTACAAGTTGATATTGAGGATGAGGGAGATGTTAAAATTGCAAAGAAACTTGCCATTGTGGGACTTTGGTGCATTCAGTGGAACCCAGTGGACCGTCCATCCATCAAAACTGTGGTACAAATGCTTGAAGGGGAGGGAGACAAGCTAATGGCACCTCCTACTCCTTTTGATTCTACTGGTTCTGCTAGAACAAATGCTGTTATTCCTGCAAGACATCTGAATTTCGAGTTGGAAGTTATTCCTGAAATACAGTAA 1785 0.4045 MPTSLKFSLLLTMLFILGNTVKGKNQCTDNCGSVHIQFPFYLRNSKLNHTTGYPTGFDLSCTDKYETVLEIPTVPVKLFVKDIDYKSQQIEIYNPQSCLSSQLLTLGNSSISPFQFQSSGLRNVSFFHCSNSMSCPILQLGSDDDFIDPEIISCTKVSDVLSVDWQLSDDSKNTLFMEWFNPNCSYCEARGQKCKWKNGTKGETECFICRTNTLPTSTVVLISAGAIIGSMLLLLLVIALFRVYRYYKMKGEDQTRIERFLEDYRAMKPTRFTYADIKRITNGFKESLGEGAHGAVFKGMLSQEILVAVKILNDTQVDGKDFINEVGTMGKIHHVNVVRLLGFCADGFHRALVYDFFPNGSLQNFLAPPDNKDVFLGWVKLQQIAVGVAKGLEYLHLGCDHRILHFDINPHNVLLDDHFSPKITDFGLAKLCPKNQSTVSMTAARGTLGYIAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRKNTNVSAEETFQVLYPEWIHNLLESRDVQVDIEDEGDVKIAKKLAIVGLWCIQWNPVDRPSIKTVVQMLEGEGDKLMAPPTPFDSTGSARTNAVIPARHLNFELEVIPEIQ 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2939g00002 594 ProSitePatterns Protein kinases ATP-binding region signature. 288 310 IPR017441 GO:0005524
Gabi2939g00002 594 ProSiteProfiles Protein kinase domain profile. 282 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2939g00002 594 Gene3D Transferase(Phosphotransferase) domain 1 357 560 - -
Gabi2939g00002 594 PANTHER RUST RESISTANCE KINASE LR10-RELATED 254 569 IPR045874 GO:0004672
Gabi2939g00002 594 Pfam Wall-associated receptor kinase galacturonan-binding 27 93 IPR025287 GO:0030247
Gabi2939g00002 594 FunFam PR5-like receptor kinase 357 562 - -
Gabi2939g00002 594 FunFam serine/threonine-protein kinase PBS1-like 250 356 - -
Gabi2939g00002 594 SUPERFAMILY Protein kinase-like (PK-like) 262 553 IPR011009 -
Gabi2939g00002 594 Pfam Protein kinase domain 285 550 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2939g00002 594 Gene3D Phosphorylase Kinase; domain 1 257 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2939g00002 Gabi-Chr2939 35248 37385 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2939g00002 31 565 Receptor kinase-like Gene Family AT1G66910 35.691 2.90e-102 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Gabi2939g00002 Pkinase 5.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2939g00002 - - gmx:100819302 942.569