Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2939g00001 ATGTACGACGTGTCTTCAAACATAGACCCATACGAACTGCAAGCAAATAAGTTGGGATTGACATGGTCGAAACCAGATTGTAGCAAGTGTGAAACACAAGGCAAGATGTGTACACTCAAGAACAACGGCACTCGAGACGACATCGAATGTTTTGACCGTTATCACAAACCAATAAAGAAGATAGTTTTAGATGCCACAGCTGTGTTCGTTGGCTCAATTCTGGTGATGCTGATTTTCATAGCGTGTTTGCGTGTCTATCGTTATTTTAAAGCGAAAGGCGAAGATCAGGCTCGAATTGAAAAGTTCTTAGAGGATTACAGGGCACTTAACCCTGCAAGATTCTCTTATGCTGATATAAAGAGGATTACAAATAATTTTAGGGACAAGTTAGGTGAAGGAGCTCATGGAGCAGTTTTCAAAGGTAAACTCTCAAATGAAATTCTGGTGGCTGTGAAGATGCTCAACAACACAGAGGGAAATGGGAAAGAGTTCATCAATGAAGTGGAAGCTATGGGCAAAATCCACCACATCAATGTGGTTCGCTTGCTTGGATTCTGTGCTGATGGATTCTATCGTGCTCTTGTTTACAATTTCTTTCCAAATGGGTCATTGCAGAACTTCATAATTCCACTTCATGACATTGACAAGGACCGTTTCCTTGGTTGGGAGAAGCTGCAACAAATTTCTCTTGGCATAGCTGAAGGGATTGAGTATCTTCATCAGGGTTGTGATCATCGAATTCTTCACTTTGACATTAATCCTCACAATGTTTTATTAGATGACAAGTTTGTTCCAAAAATTTCGGATTTTGGTTTGGCAAAGTTGTGTTCTAAGAATCAAAGCATAGTGTCAGTAACTGCTGCCAGGGGGACCTTAGGTTACATTGCACCTGAAGTTTTTTCGAGAAACTTTGGAAACGTGTCTTATAAATCTGATATATATAGTTATGGGATGTTATTGCTTGAAATGGTTGGAGGTAGAAAGAATATAGGCAAGTCATCTGATGAAACTTTACAAGTTCTGTATCCAGAATGGATTCATAATCTACTTGAAGGACGAGATATACATATAGAAATTGAGGGAACTGAAGATCTTAAAATTGTAAAGAAACTTGCAATTGTTGGACTTTGGTGCATTCAGTGGCACCCAGTGAACCGTCCATCCATGAAAGCTGTGCTGCAAATGTTGGAGGGTCAAGATGAAGGAAATTTAATGGTGCCTCCAAGTCCTTTTGATTCAACAACTTCCATTGGTACTACAATTCCGGCAAGATATTCAAGCTTGGAGTTGGAAGTTATACAAGAATGA 1308 0.3953 MYDVSSNIDPYELQANKLGLTWSKPDCSKCETQGKMCTLKNNGTRDDIECFDRYHKPIKKIVLDATAVFVGSILVMLIFIACLRVYRYFKAKGEDQARIEKFLEDYRALNPARFSYADIKRITNNFRDKLGEGAHGAVFKGKLSNEILVAVKMLNNTEGNGKEFINEVEAMGKIHHINVVRLLGFCADGFYRALVYNFFPNGSLQNFIIPLHDIDKDRFLGWEKLQQISLGIAEGIEYLHQGCDHRILHFDINPHNVLLDDKFVPKISDFGLAKLCSKNQSIVSVTAARGTLGYIAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRKNIGKSSDETLQVLYPEWIHNLLEGRDIHIEIEGTEDLKIVKKLAIVGLWCIQWHPVNRPSMKAVLQMLEGQDEGNLMVPPSPFDSTTSIGTTIPARYSSLELEVIQE 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2939g00001 435 Gene3D Phosphorylase Kinase; domain 1 99 198 - -
Gabi2939g00001 435 ProSitePatterns Protein kinases ATP-binding region signature. 130 152 IPR017441 GO:0005524
Gabi2939g00001 435 FunFam serine/threonine-protein kinase PBS1-like 92 198 - -
Gabi2939g00001 435 SUPERFAMILY Protein kinase-like (PK-like) 107 397 IPR011009 -
Gabi2939g00001 435 ProSiteProfiles Protein kinase domain profile. 124 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2939g00001 435 PANTHER RUST RESISTANCE KINASE LR10-RELATED 96 413 IPR045874 GO:0004672
Gabi2939g00001 435 FunFam PR5-like receptor kinase 199 407 - -
Gabi2939g00001 435 Pfam Protein kinase domain 128 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2939g00001 435 Gene3D Transferase(Phosphotransferase) domain 1 199 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2939g00001 Gabi-Chr2939 18340 19944 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2939g00001 89 410 Receptor kinase-like Gene Family AT1G66980 49.697 8.50e-101 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Gabi2939g00001 Pkinase 3.5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2939g00001 - - gmx:102662104 602.438