Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2935g00033 ATGTCAAATATTTCAGGTGATGATGAAGGAAGCTTCTACTCTGGAAACAATGGAGAAGAAGTTCATCAAGAAAACGAGCAGCAACAACTACAAAACCACCCTCATGGCTCAAGTTCAGGACCATCCGGTGCTTGCAATAGCAATGGCTCCACTAATCAACAACCATCCAAGAAGAAAAGAAACCTACCTGGAACCCCAGATCCCAATGCTGAAGTCATTGCTTTATCACCAACCACATTAATGGCAACAAATAGATTCGTATGTGAGATCTGCAACAAAGGGTTTCAGAGGGACCAAAACCTACAGTTGCACCGCAGAGGTCACAATCTTCCTTGGAAACTGAGGCAAAGAACAAGCACTGAGGTGAAGAAACGGGTCTATGTGTGCCCTGAGCCATCATGCGTCCACCATAACCCAGTTCGTGCATTAGGAGATCTCACTGGCATTAAAAAGCATTATAGCCGCAAGCATGGTGAGAAGAAATGGAAATGTGACAAGTGCTCTAAAAGATATGCAGTCCAATCTGATTGGAAGGCCCATCAGAAAACCTGTGGCGCTAGGGATATGACTGTTGGATAA 579 0.4456 MSNISGDDEGSFYSGNNGEEVHQENEQQQLQNHPHGSSSGPSGACNSNGSTNQQPSKKKRNLPGTPDPNAEVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSTEVKKRVYVCPEPSCVHHNPVRALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHQKTCGARDMTVG 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2935g00033 192 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 37 188 IPR031140 -
Gabi2935g00033 192 FunFam protein indeterminate-domain 12-like 65 133 - -
Gabi2935g00033 192 SMART c2h2final6 86 108 IPR013087 -
Gabi2935g00033 192 SMART c2h2final6 162 182 IPR013087 -
Gabi2935g00033 192 SMART c2h2final6 127 157 IPR013087 -
Gabi2935g00033 192 SUPERFAMILY beta-beta-alpha zinc fingers 85 183 IPR036236 -
Gabi2935g00033 192 Pfam Zinc-finger double-stranded RNA-binding 86 108 IPR022755 -
Gabi2935g00033 192 ProSiteProfiles Zinc finger C2H2 type domain profile. 86 108 IPR013087 -
Gabi2935g00033 192 MobiDBLite consensus disorder prediction 1 71 - -
Gabi2935g00033 192 MobiDBLite consensus disorder prediction 1 60 - -
Gabi2935g00033 192 ProSitePatterns Zinc finger C2H2 type domain signature. 88 108 IPR013087 -
Gabi2935g00033 192 Gene3D Classic Zinc Finger 64 133 - -
Gabi2935g00033 192 Gene3D Classic Zinc Finger 140 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2935g00033 Gabi-Chr2935 259620 260928 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2935g00033 42 188 IDZ Gene Family AT3G50700 77.333 1.26e-84 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi2935g00033 zf-C2H2_jaz 4.4e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2935g00033 - - gmx:100782774 338.576