Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2935g00032 ATGTCAAATATTTCAGGTGATGAAGGAAGCTTCTACTCAGGAAACAATGGAGAAGAAGTTCATCAAGAAAACGAGCAGCAACAACTACAAAACCACCCTCATGGCTCAAGTTCAGGACCATCCGGTGCTTGCAATAGCAATGGCTCCACTAATCAACAACAACAACAACCATCCAAGAAGAAAAGAAATCTACCTGGAACCCCAGATCCTAATGCTGAAGTCATTGCTTTATCACCAACCACATTAATGGCAACAAATAGATTCGTATGTGAGATCTGCAACAAAGGGTTTCAGAGGGACCAAAACCTACAGTTGCACCGCAGAGGTCACAATCTTCCTTGGAAACTGAGACAAAGAACAAGCACTGAGGTGAAGAAACGGGTCTATGTGTGCCCTGAGTCATCATGCGTCCACCATAACCCAGTTCGTGCATTAGGTGACCTCACTGGCATTAAAAAGCATTATAGCCGCAAACATGGTGAGAAGAAATGGAAATGCGACAAGTGCTCTAAAAGATATGCAGTCCAATCTGATTGGAAGGCCCACCAGAAAACCTGTGGTACTAGGGAATACAAATGTGATTGTGGAACCATATTTTCAAGGAGAGATAGTTTTATCACCCACAGAGCTTTCTGTGACGCATTAACTGAAGAAAATAACCGAGTGAACCAGGGATTAACAAGTGGCATGCCACTAAACTTGCAAAGTCAAATGCCGGATCTTATGTCTACTATGCCTCTAACACCAAGGTCCAACAATATCAGTGACTATGACCCTAAGAATCCACTCAAATCTCTCCCCCAAGAAGTTGTCCCAATACCATTCAAGTCCATGAATATGGGTGGTGGCATGTTCTCCACCAATGCAGGTTCACTTTTTGGTGGTCCAAAAAGCATGTCTCCCTCTTCTTCTAGCCTTCAGCTCAGTTCCAATAGCTCTTCTGGCTTCAATAATTACTTGCAAGACAGCAAAAATGGAGGACTAATTTCTGGCTCAGCTCTCATGTCAGCAACAGCTTTATTACAAAAAGCAGCTCAAATGGGTGCCACTGCAAGCAATAGCATTAACTCCCCCATGATGCAAAAAAGCTTTGTTAGTAGCATGGTTGGTCCTGATCATGTTTCTTCCACTAAATCACCATATTCAGGTCCTCATCATCTTCAGTATAACCCTTCATATGACCACTTTCCTCCTCATCCTGATGTATCTAACATGGCTGGGGTTAGTGGTACCCCTGCATTCACCAACCAATTGTTTCAGAAAGGACAAGAAGAAATTTCACAACTACTTGTTACTAACAATGGATCTACAATGAATGATATAGGTATGTTCAGCCAAATGTCCATGGGAAGTGACCACAATAACCCAGGATTGATGAAGAATGTGGAACAAGAGATTAGTAATAGTCCAAGTTTGATTAATGGAAGAGATGTAGCAGAAGTTCATGACTTCTTGGGCATTGGGGGTTCACCTTCAAGAGCAATGAATTTGCATGAACCACAACAACAACAAAGATTGGAAGCATTAAGCCACCAGAGGTTGGAATTTATGAACCACTTTCATCACCATCTTCCACATGAGGATTCAACTATGGAGAAATCCATTTGGGATGTGTGA 1617 0.4224 MSNISGDEGSFYSGNNGEEVHQENEQQQLQNHPHGSSSGPSGACNSNGSTNQQQQQPSKKKRNLPGTPDPNAEVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSTEVKKRVYVCPESSCVHHNPVRALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDALTEENNRVNQGLTSGMPLNLQSQMPDLMSTMPLTPRSNNISDYDPKNPLKSLPQEVVPIPFKSMNMGGGMFSTNAGSLFGGPKSMSPSSSSLQLSSNSSSGFNNYLQDSKNGGLISGSALMSATALLQKAAQMGATASNSINSPMMQKSFVSSMVGPDHVSSTKSPYSGPHHLQYNPSYDHFPPHPDVSNMAGVSGTPAFTNQLFQKGQEEISQLLVTNNGSTMNDIGMFSQMSMGSDHNNPGLMKNVEQEISNSPSLINGRDVAEVHDFLGIGGSPSRAMNLHEPQQQQRLEALSHQRLEFMNHFHHHLPHEDSTMEKSIWDV 538
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gabi2935g00032 538 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
Gabi2935g00032 538 Pfam Zinc finger, C2H2 type 88 110 IPR013087 -
Gabi2935g00032 538 SUPERFAMILY beta-beta-alpha zinc fingers 87 185 IPR036236 -
Gabi2935g00032 538 Gene3D Classic Zinc Finger 143 222 - -
Gabi2935g00032 538 FunFam protein indeterminate-domain 12-like 67 135 - -
Gabi2935g00032 538 FunFam protein indeterminate-domain 5, chloroplastic-like 142 221 - -
Gabi2935g00032 538 SMART c2h2final6 129 159 IPR013087 -
Gabi2935g00032 538 SMART c2h2final6 164 184 IPR013087 -
Gabi2935g00032 538 SMART c2h2final6 88 110 IPR013087 -
Gabi2935g00032 538 MobiDBLite consensus disorder prediction 1 73 - -
Gabi2935g00032 538 Gene3D Classic Zinc Finger 66 137 - -
Gabi2935g00032 538 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 110 IPR013087 -
Gabi2935g00032 538 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 37 502 IPR031140 -
Gabi2935g00032 538 MobiDBLite consensus disorder prediction 1 62 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gabi2935g00032 Gabi-Chr2935 249642 252541 Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2935g00032 45 221 IDZ Gene Family AT3G50700 81.356 5.59e-109 331
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi2935g00032 zf-C2H2 0.0055 CL0361