Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2935g00026 ATGAAAATGGTGGAGAGGAGAAAGCCTCTAGTACTATGTTCCACCAAACATGTGATCAATTCCTTATTGAGCTCTTCTTCCACTTGGTCAAGCAACAACCTCTTCTTCCATGACCATGACCATGACCATGACCATGGCCATGATGATGAATGTTTGCCCAATTTCCACTTACCTGTTGGCATTCTTCGATTCTCCAACCTCGAAAATCAACCCCAATTCCTTTCTCTTGACCATTCTGCGCTCCTTGGCCTCTCCACTTCTCTTCTCAAAAGGCTTTCCATTACTTCAGGTTCACTGGTTCTGGTCAAGAATGCTGAGATTAACATACAGAGAATTGCAGTTGCCATTGCTCTTGATCCTCCACGTACCACCCCTGATACTGAATCACCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCGAATTATGCTTGTATTTCCTTCTTGTGATTTCCCTCGTAGTGGCCCGTTGTTGTTAGATGATGAATTTGCTTATTTATCTCCACTTTTAGCCTTTAATCTTAACTTGCACATGACATGCTTAAAATCCATTCTACACCATGGCGAAGACGCTTTAGCGTCTTATTTCAAATCCCAAGGGGGTGACTGTGATGAAGACACTGCTAAAAGCGTTAACGATTCTGTCATCAACGTTGAATTGGCACCTCTTGCTCAACCTCCAAGGTTTGCCTCACTTCTGAGGGTTTCTTTTGTTAAGATACCAGAATGTGGCATCCTTGAATCTATTAGAGCAAGTTCACCTGTTGAATCTGAAGAACGTCAAGACATGATTGATTTGGCATTGCAAATGTACTTTGAGGTCGATAGGTATTTGTCAAGGGGAGATGTTTTTGGAATTAACATAAATTGGAAATGCAATTCCACTATTTGCATTCCATGCAGCCAAAAATCACAAAAGAAAAATGACAACCTTGTCTGTTTCAAGGTCATTGCTATGGAACCATCAGATGAACCAGTTGTTCGTGTCAATAGAACCTTAACTGCTCTGGTCCTAGTAGGGAGTGCCCCATCCGCACTTCCTCCGGATTTGTTAATTGCTGGACCAGAAGGGCCTGTGCCTTTGCAAGGAGACACAGTAAAGATATTGGCTTCGATACTTACACCAACTTTCTGTCCATCAGTGCTTTCTTCCAAGTTTAGAGTTTCAGTTCTATTGTATGGCTTGGCAGGTTGTGGGAAAAGGACTGTCGTTAGATATGTTGCTCGTCGACTGGGCCTGCATGTGGTGGAATATAACTGTCATGATCTAATGATGGCTGATAGAACATCTGTTGCTCTAGCTCAAGCTTTCAAGACGGCTCAAAGATACTCGCCGACAGTACTTCTTCTACGTCATTTTGATGTTTTTCGAGATTTCCATTCGCTTGAAGGTTCACTAAATGATCAAAGAGGCAATACATCTGAAGTTGCATCAGTTATTAGGAAATTCACTGAGCCAATTTGTGAACATGGTGATGGTAACTCCCTGGGAAAATCAAACGGTGAATTTGTGGAGAAGAATGCTGAAAAGACAAGTGGTCATCAGGTCCTGTTGATTGCTGCTGCTGACAGTTCAGAAGGTCTACCTTCAACTATCAGACGCTGCTTTAGCCATGAAATAAGCATGGGGCCTTTGACTGAAGAACAAAGGGCTGAAATGCTATTCCAGTCACTGCAAAGTGTTTCTGATCTACTCTCTAATACTAATTCAGAGGGTCTTGTAAAAGAAATAGTTGGACAGACATCTGGTTTCATGCCTAGGGATATGTGTGCCTTAATTGCTGATGCTGGTGCAAACTTATTTCCCAGGAGAAATGTTGAAGCAGACAAAGATGGACCTGATGATGTAGATGGTTCTCTAATTTCCAAGGTGACGGAGGACAACAATCACTTGAAATTCTCACCTCATATTCCTGGGAAAGAAGACTTAATGAATGCTTTGGAACGATCAAAGAAAAGAAATGCATCAGCATTGGGCACTCCAAAGGTTCCAAATGTGAAATGGGAAGACGTTGGTGGGCTTGAAGATGTCAAAAAATCAATCCTGGATACTGTTCAGTTACCTCTCCTGCATAAAGATCTGTTTTCAGCTGGATTACGTAAGCGGTCTGGTGTTCTTTTGTATGGTCCCCCTGGAACTGGCAAAACATTATTAGCAAAAGCTGTTGCTACAGAATGTTCCTTAAATTTTCTTAGTGTAAAAGGTCCTGAACTGATCAACATGTACATAGGAGAGTCCGAGAAGAATGTTAGAGAAATTTTCCAGAAGGCCAGATCTGCGCGTCCATGTGTCATCTTCTTTGATGAGCTTGATTCTCTTGCACCAGCTCGGGGTGCTTCTGGAGATTCTGGGGGGGTAATGGACAGAGTGGTTTCTCAGATGCTTGCGGAGATTGACGGCTTAAGTGATTCAACACAGGATCTATTTATTATAGGTGCAAGTAATAGACCAGATTTGATAGACCCAGCACTTTTGCGCCCTGGTCGATTTGATAAACTGCTATACGTTGGAGTTAACTCTGATGCATCTTACAGGGAGCGGGTCCTGAAAGCTCTTACCCGAAAGTTTAAATTGCATGAAGATGTTTCACTTTACTCTATAGCAAAAAAATGTCCACCAAACTTCACTGGTGCAGACATGTATGCCTTGTGTGCTGATGCTTGGTTCCATGCTGCAAAGCGCAAGGTTTTGAGTGCAAATCCAGAGTCTACCAGCCAAGATAATGAAGCAGATTCTGTTGTTGTTGAATACAATGATTTTGTGCAGGTCTTGGGAGAGCTGCCACCTTCCCTCTCCATGGCTGAGCTTAAGAAGTACGAGCAACTGAGAGATCAGTTTGAAGGCACCTCTAAATGA 2865 0.4248 MKMVERRKPLVLCSTKHVINSLLSSSSTWSSNNLFFHDHDHDHDHGHDDECLPNFHLPVGILRFSNLENQPQFLSLDHSALLGLSTSLLKRLSITSGSLVLVKNAEINIQRIAVAIALDPPRTTPDTESPSSSSSSSSSSSSSRIMLVFPSCDFPRSGPLLLDDEFAYLSPLLAFNLNLHMTCLKSILHHGEDALASYFKSQGGDCDEDTAKSVNDSVINVELAPLAQPPRFASLLRVSFVKIPECGILESIRASSPVESEERQDMIDLALQMYFEVDRYLSRGDVFGININWKCNSTICIPCSQKSQKKNDNLVCFKVIAMEPSDEPVVRVNRTLTALVLVGSAPSALPPDLLIAGPEGPVPLQGDTVKILASILTPTFCPSVLSSKFRVSVLLYGLAGCGKRTVVRYVARRLGLHVVEYNCHDLMMADRTSVALAQAFKTAQRYSPTVLLLRHFDVFRDFHSLEGSLNDQRGNTSEVASVIRKFTEPICEHGDGNSLGKSNGEFVEKNAEKTSGHQVLLIAAADSSEGLPSTIRRCFSHEISMGPLTEEQRAEMLFQSLQSVSDLLSNTNSEGLVKEIVGQTSGFMPRDMCALIADAGANLFPRRNVEADKDGPDDVDGSLISKVTEDNNHLKFSPHIPGKEDLMNALERSKKRNASALGTPKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSAGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVREIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLSDSTQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDASYRERVLKALTRKFKLHEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSANPESTSQDNEADSVVVEYNDFVQVLGELPPSLSMAELKKYEQLRDQFEGTSK 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2935g00026 954 SMART AAA_5 704 844 IPR003593 GO:0016887
Gabi2935g00026 954 SMART AAA_5 389 549 IPR003593 GO:0016887
Gabi2935g00026 954 FunFam Peroxisome biogenesis protein 6 842 928 - -
Gabi2935g00026 954 Pfam ATPase family associated with various cellular activities (AAA) 393 544 IPR003959 GO:0005524|GO:0016887
Gabi2935g00026 954 Pfam ATPase family associated with various cellular activities (AAA) 708 840 IPR003959 GO:0005524|GO:0016887
Gabi2935g00026 954 Gene3D - 666 943 IPR027417 -
Gabi2935g00026 954 FunFam Peroxisomal biogenesis factor 6 666 855 - -
Gabi2935g00026 954 Gene3D - 369 569 IPR027417 -
Gabi2935g00026 954 FunFam Peroxisome biogenesis protein 6 362 546 - -
Gabi2935g00026 954 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 361 604 IPR027417 -
Gabi2935g00026 954 MobiDBLite consensus disorder prediction 120 141 - -
Gabi2935g00026 954 PANTHER AAA-FAMILY ATPASE 76 951 - -
Gabi2935g00026 954 MobiDBLite consensus disorder prediction 124 141 - -
Gabi2935g00026 954 ProSitePatterns AAA-protein family signature. 811 829 IPR003960 GO:0005524|GO:0016887
Gabi2935g00026 954 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 667 948 IPR027417 -
Gabi2935g00026 954 Gene3D - 842 928 - -
Gabi2935g00026 954 CDD RecA-like_PEX6_r2 680 839 IPR047533 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2935g00026 Gabi-Chr2935 164564 171512 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2935g00026 674 897 Calmodulin-binding Proteins AT3G56690 40.444 2.32e-40 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2935g00026 K13339 - gmx:100820183 1510.74