Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2935g00009 ATGGAGGAACACTCTGCATCTGCAACTGAAAGGAGAGAGGACACGGGGAAGTTGCAGTTTGGATGTGACCACTATAAGAGACGATGCAAAATTCGAGCCCCGTGTTGCAATCAGATCTTCCCATGTCGTCATTGCCACAACGACGCCATGAGCTCATCTATCAACCCCATGGATCGTCATGAACTTGTCAGACACGATGTTGTGCATGTTATATGTTCTATCTGTGATACTGAACAGGAGGTTGCCAAGGTGTGTTCTAATTGTGGTGTCAACATGGGAGAATATTACTGCGAGATTTGCAAATTCCATGATGATAATACAGATAAAGGACAATTTCATTGCGATGAATGTGGGATTTGCAGGGTTGGTGGTCGTGATAATTTCTTTCACTGTGAGAAATGTGGCTCTTGCTATTCAGTGAGTTTGCAAAACAATCACAAATGTGTAGAGAACTCAATGAAGAGTTTCTGCCCTGTCTGTTACGAGTACATGTTTGATTCAATAAAAGGCAGCACAATTTTGAGGTGTGGGCACACAATGCATATGGAATGCTATCAAAATATGGCCACTCAAAATCAGTATCGTTGTTGTATCTGCTTGAAGACAATATTCGATATGTCTCAGAGCTGGGAACAATTAGATCAGGAGATTGAAGCTGGTCCTATGCCCGAGGAGTATAATTTTGAGGTTTCAATTCTGTGTAATGATTGTAACACAACCAGCAGAGTTTCCTTTCACATATTTGGTCACAAGTGTAGACAGTGCAGTTCGTATAACACCCGTAGGATTTCGACACCCTAA 801 0.4195 MEEHSASATERREDTGKLQFGCDHYKRRCKIRAPCCNQIFPCRHCHNDAMSSSINPMDRHELVRHDVVHVICSICDTEQEVAKVCSNCGVNMGEYYCEICKFHDDNTDKGQFHCDECGICRVGGRDNFFHCEKCGSCYSVSLQNNHKCVENSMKSFCPVCYEYMFDSIKGSTILRCGHTMHMECYQNMATQNQYRCCICLKTIFDMSQSWEQLDQEIEAGPMPEEYNFEVSILCNDCNTTSRVSFHIFGHKCRQCSSYNTRRISTP 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2935g00009 266 SMART ring_2 157 199 IPR001841 -
Gabi2935g00009 266 Pfam CHY zinc finger 22 102 IPR008913 GO:0008270
Gabi2935g00009 266 Pfam Zinc-ribbon 204 261 IPR039512 -
Gabi2935g00009 266 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 4 264 - -
Gabi2935g00009 266 ProSiteProfiles Zinc finger RING-type profile. 157 199 IPR001841 -
Gabi2935g00009 266 ProSiteProfiles Zinc finger CTCHY-type profile. 92 156 IPR017921 -
Gabi2935g00009 266 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 227 IPR013083 -
Gabi2935g00009 266 ProSiteProfiles Zinc finger CHY-type profile. 15 90 IPR008913 GO:0008270
Gabi2935g00009 266 SUPERFAMILY CHY zinc finger-like 18 91 IPR037274 GO:0008270
Gabi2935g00009 266 SUPERFAMILY RING/U-box 156 205 - -
Gabi2935g00009 266 Gene3D - 228 265 - -
Gabi2935g00009 266 SUPERFAMILY Zinc hairpin stack 93 150 IPR037275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2935g00009 Gabi-Chr2935 80330 84611 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2935g00009 14 265 C2H2 Transcription Factor Family AT3G18290 40.927 4.88e-52 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2935g00009 K10144 - gmx:100818374 482.256