Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2935g00008 ATGAGTAGTTATCAACATACACACCAAACAACACAAGACTCACACAAAGTGACACCATGTGACTATTGTGGACACACAACAGCTGTTCTCTATTGCAGAGCTGATTCTGCAAAGCTTTGTTTGTCTTGTGATCGTGAAGTTCACTCTACAAACCAGCTTTTCTCAAAGCACACACGCACTCTGCTCTGTGATGTATGTGATGATTCCCCTGCTACTATACTCTGTTCAGCTGAATCCTCTGTTCTGTGCCAGAACTGTGACTGGGAAAAACACAACCTTTCTCTCCATGAACGGAGGCCTCTTGAGGGGTTCACTGGGTGCCCTTCTGTCACCGAAATCTTAACAATTATGGGGTTCCAAGATATGGGTAAAAAATCTCTGCTTTCATCTGATGAAAGAGGTGTTTCTGGTGATGGGTTTTTAGGGTACGCGATTGAAGAAGGGATTTCGGATTTGTTTGTTTGGGATGCTCCTTCTTTTGTTAGTCTTGACGATTTGATTTCTTCTTCTGCTTCTTCTCATAATTATCATGCTATGGAAGTTCCTCCTCTGCCCAAGAATCGTAAGGCTGCTTGTGGGCGACGCAGAGAAGAGATTCTTGGTCAGCTTCGTGAACTAGCAAAGTCTGAGCCCTTGGACCCTGATCCTCATGTGCAATCAGAAAAATTGTCCTCTGGTTTTGAACGTGACATGGAGGCTGATCTATTTCCTTCTCATGAGTGTCATAGAGAAAGCAGTGAGCCTATGTATCAAGTTGTTCCTCCTGATACATCATTGAGAGCTTATACCGATGAAATTCCAGTTAAATATTCGACTTCTGCTATCGAGGAGACTCATAACTATGGCAACAATGTAGAGCAACCATCAAATTCTCTCAAGTGTGAAACCTTATCAATTACTCCTAAAGCTGCTCCATGTGAGTTAACGAGTCAAGAAAGAGATTCTGCATTATTACGGTACAAGCAGAAGAAGAAAACTAGAAGATATGACAACCGCATAAGGTATGAATCACGAAAAGTTCGGGCAGAAAGCAGGATACGAGTTAAGGGCCGATTTGCCAAGATTGAACATTGA 1074 0.4255 MSSYQHTHQTTQDSHKVTPCDYCGHTTAVLYCRADSAKLCLSCDREVHSTNQLFSKHTRTLLCDVCDDSPATILCSAESSVLCQNCDWEKHNLSLHERRPLEGFTGCPSVTEILTIMGFQDMGKKSLLSSDERGVSGDGFLGYAIEEGISDLFVWDAPSFVSLDDLISSSASSHNYHAMEVPPLPKNRKAACGRRREEILGQLRELAKSEPLDPDPHVQSEKLSSGFERDMEADLFPSHECHRESSEPMYQVVPPDTSLRAYTDEIPVKYSTSAIEETHNYGNNVEQPSNSLKCETLSITPKAAPCELTSQERDSALLRYKQKKKTRRYDNRIRYESRKVRAESRIRVKGRFAKIEH 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2935g00008 357 ProSiteProfiles Zinc finger B-box type profile. 15 62 IPR000315 GO:0008270
Gabi2935g00008 357 CDD Bbox1_BBX-like 62 101 - -
Gabi2935g00008 357 CDD Bbox1_BBX-like 19 62 - -
Gabi2935g00008 357 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 19 354 - -
Gabi2935g00008 357 ProSiteProfiles Zinc finger B-box type profile. 58 101 IPR000315 GO:0008270
Gabi2935g00008 357 SMART bboxneu5 63 101 IPR000315 GO:0008270
Gabi2935g00008 357 SMART bboxneu5 15 62 IPR000315 GO:0008270
Gabi2935g00008 357 Pfam CCT motif 313 354 IPR010402 GO:0005515
Gabi2935g00008 357 ProSiteProfiles CCT domain profile. 313 355 IPR010402 GO:0005515
Gabi2935g00008 357 Pfam B-box zinc finger 62 101 IPR000315 GO:0008270
Gabi2935g00008 357 Pfam B-box zinc finger 16 60 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2935g00008 Gabi-Chr2935 73552 77919 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2935g00008 20 328 C2C2-CO-like Transcription Factor Family AT2G47890 39.264 4.11e-72 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Gabi2935g00008 zf-B_box 2.4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2935g00008 - - gmx:100817838 533.102