Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2931g00033 ATGGCCGAACAAAATAGTGGCCGTGATCAGAAGAAGAGGTTTGCCATTGTTGGCATCTCTTCAATCCTTCTTGTGGCTATGGTGGCTGCGGTGGCGGTTGGTTTAACCCGCAGCGGCACCGGCAAAAGCAACGGGCATGATGAGGGTACTGGTCATGTCTTTAGCTCTCAAAGGAACGTAGAAATGCTTTGCCAATCAACAGAATACCCAGAAACCTGCCACAAAAGCCTTGATAAAGCATCAAACGAAACCACAGACATAAAAGAGCTTATCAAAATCGCATTCAATGCAACAGCTGTGGAGCTTTTGAACCACATAAACAACTCCACCCTTTATCATGAGTTGGCAAAGGACAACATGACAAAACAAGCCATGGATATTTGCAAGGAAGTGTTGGATTATGCTGTTGATGACATTCACAAGTCTATTGAGACAATGGACAAGTTTGACTTCAACAAGCTCAATGAATACGCTTATGACCTTAAGGTTTGGATCACAGGAACCCTCTCTCACCAACAAACTTGCTTAGATGGCTTTGAGAACACAACAACACAAGCTGGTTTAACCATGGCTAAGGTTCTGAACACCTCTTTGGAGCTAAGTAGCAATGCTTTGGATATGATCAATGGTGTCTCTGGCATTCTCAAGGATCTCAACATCAACACAATTGGTAGCAGAAGACTTCTCTCTGAGGATGGTTTCCCTTCATGGGTGAGTGAAGGGCAAAGACGTCTTCTTCAGGTTGGTCCTGGAAGCATTAAGCCTAATGCTGTTGTTGCTAAAGATGGGAGTGGCCAATTCAAAACACTTGGTGATGCTCTTAAGACTGTTCCTCCAAAAAATGCAGTGCCTTTTGTGATTTATGTTAAGACTGGTGTATACAATGAGATTGTAAATGTGCCTAAGGAAATGACCCATGTCACCATCATCGGAGATGGTCCCACAAAAACCAGATTCAGTGGTAGCCTCAACTTCAAGGACGGTGTCCAAACTTACAACACTGCAACCTTTGGAGTTAACGGTGCTAACTTCATGGCAAAGGATGTTGGATTCGAGAACACAGCAGGAGCAACGAAGCACCAAGCAGTGGCACTTAGAGTAACAGCAGACCAAGCATTGTTCTACAATTGCCAAATGGATGGTTTCCAAGACACCCTTTACACTCAATCCCAACGCCAATTCTACCGTGACTGCACCGTAAGTGGAACCATTGATTTCATCTTCGGTGACGCCTTTGGAGTCTTCCAAAACTGCAAGCTAATAGTGAGAAAACCCTTAGACTCACAACAATGCATGGTAACAGCAGGTGGCAGAACAAAACAAAATAGCCTTAGTGCCCTTGTTTTCCAAAACTGTGTCTTCACAGGGGAACCAGCGGTTGCTGCCCTTAAACCCAAGATATCATACCTTGGAAGACCATGGAAACCTTATTCTAAGGTTGTTATCATGGACTCACAAATTGATGATATCTTTGTCCCTGAAGGGTACATGGCATGGATGGGAAGTGCTTACAAGGAAACATGCACTTATTATGAGTACAACAATAAGGGTCCTGGTGCTGACACGTCATCAAGAGTCAAGTGGTTTGGTGTTAAGACTATAACACCTACGGAAGCTGGTGATTATTACCCTGGAAAGTTCTTTGAACTTGTTAACGCTACTGAACGTGATGGTTGGATTGTTAACTCTGGGGTACCCTACAACCTTGGACCTATGGCTAGTAAAAATTCCTCACCCGTTGGTGGTTTTACAACGAGAGGACAAGGGAAGGCACGTGTCCTTATCCAGCCTGAGCATCCTGAACGTACTCGTGAAATGTAA 1821 0.4421 MAEQNSGRDQKKRFAIVGISSILLVAMVAAVAVGLTRSGTGKSNGHDEGTGHVFSSQRNVEMLCQSTEYPETCHKSLDKASNETTDIKELIKIAFNATAVELLNHINNSTLYHELAKDNMTKQAMDICKEVLDYAVDDIHKSIETMDKFDFNKLNEYAYDLKVWITGTLSHQQTCLDGFENTTTQAGLTMAKVLNTSLELSSNALDMINGVSGILKDLNINTIGSRRLLSEDGFPSWVSEGQRRLLQVGPGSIKPNAVVAKDGSGQFKTLGDALKTVPPKNAVPFVIYVKTGVYNEIVNVPKEMTHVTIIGDGPTKTRFSGSLNFKDGVQTYNTATFGVNGANFMAKDVGFENTAGATKHQAVALRVTADQALFYNCQMDGFQDTLYTQSQRQFYRDCTVSGTIDFIFGDAFGVFQNCKLIVRKPLDSQQCMVTAGGRTKQNSLSALVFQNCVFTGEPAVAALKPKISYLGRPWKPYSKVVIMDSQIDDIFVPEGYMAWMGSAYKETCTYYEYNNKGPGADTSSRVKWFGVKTITPTEAGDYYPGKFFELVNATERDGWIVNSGVPYNLGPMASKNSSPVGGFTTRGQGKARVLIQPEHPERTREM 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2931g00033 606 Gene3D Invertase/pectin methylesterase inhibitor family protein 55 211 IPR035513 -
Gabi2931g00033 606 NCBIfam pectinesterase inhibitor domain 56 210 IPR006501 GO:0004857
Gabi2931g00033 606 CDD PMEI-like_3 63 213 - -
Gabi2931g00033 606 FunFam Pectinesterase 56 212 - -
Gabi2931g00033 606 SMART PMEI_2 55 207 IPR006501 GO:0004857
Gabi2931g00033 606 PANTHER PECTINESTERASE 21 560 - -
Gabi2931g00033 606 ProSitePatterns Pectinesterase signature 2. 400 409 IPR033131 -
Gabi2931g00033 606 ProSitePatterns Pectinesterase signature 1. 281 300 IPR018040 -
Gabi2931g00033 606 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 59 210 IPR035513 -
Gabi2931g00033 606 Pfam Pectinesterase 256 548 IPR000070 GO:0030599|GO:0042545
Gabi2931g00033 606 Pfam Plant invertase/pectin methylesterase inhibitor 60 207 IPR006501 GO:0004857
Gabi2931g00033 606 SUPERFAMILY Pectin lyase-like 254 548 IPR011050 -
Gabi2931g00033 606 Gene3D - 253 572 IPR012334 -
Gabi2931g00033 606 FunFam Pectinesterase 4 253 571 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2931g00033 Gabi-Chr2931 364033 366518 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2931g00033 10 573 Carbohydrate Esterase AT3G05610 45.855 0.0 542
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2931g00033 K01051 - gmx:100784682 857.44