LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi2929g00019	ATGTATAAGAACATGGAGGAGACACGAGAAGATGCAGGGCCCACAGAGCAAAGGCCATCCAATGTGTGGTGGCCTTCAGATTTCATTGAAAACTTTGGATCTGTTTCTTTGGGTTCTCAAGATGAGATCTTGAATAATAAAGATTCACCTGGACATTCGAACCAAGATGTTATGACACCTCAGAAGGCGTCACAAATTCTCTGGCGCACTGGAATGCTTTCAGAACCGATACCAAATGGTTTTTATTCAGTCATTCCGGAGAAAAGACTCAAGAAATATTTTGATGGTATTCCTACTTTGGAGGAGCTTCATGCTTTGGGTGGAGAGGGTTTTAGGGCTGATATCATTGTTGTGGATGCAGAAAAAGATAGAAAGTTATCTATGTTGAAGCAACTAATTGTGGCATTGGTTAAAGGATTGAACTCAAACCCAGCTGCAATGATTAAGAAGATAGCTGGATTAGTTTCTGATTTCTATAAACGACCACATGTAGAAAGTCCAGCAAAAACTGCACTAGAGGAATCCTCTCACATGTTTGAGAATCGTGGTGTCCAGATGCTGGGGCAAATAAGGCATGGTTCATGCCGTCCTCGAGCCATCTTATTTAAAGTATTAGCAGATACTGTAGGTCTTGAAAGCGGGCTTATGATGGGTTTTCCAAATGATGGGGCTGCTGAATGTGTAGACTCATACAAGCATATGTCTGTGATAGTTGTGTTAAATTCTGTGGAATTGCTGGTTGATCTTATGCGTTTTCCTGGCCAACTGTTGCCCCGATCAACCAAGTCAATTCTTATGACCCACATTTCTGCAGCAGGAGAGAGTGATTCAGCAGAAAATGATTCTTGTGATTCACCACTAGAGCCAAACAGTCCCTTATATGGGGTTTCAGAGAGGTTAGATCCTGAGAGTGTCGAAAAGGAGGAAAACCTCCAATTCCATAGAAGATTTGAAGCATCTTCAAATGTATCAGGCCTTCCTTTGAGAAATATGATGTTACGATCAAATACCAGTCTGGACGGGAAATTGAGTTTGTCTCATAGTGAACCCAACATTGCAACTGCATTTGGTCGCCGTAGTCGGAGAAAGGCCATTGCTGAACAGAGGACTGCTAGTTCAAGTCCAGAACATCCATCATTTCGAGCACGTGGACAATCCAAGCTTAGTGGTGATAGGGCAGCATTTAGAGATTTTTCTGATGACCAGGCTACATCAAGATCCAGCTATAAGTCAGATGGTGCATCCTCATCACAAGCTCGTAGGATACGAAGAAGAAGCATCAGCATTACACCAGAGATTGGTGATGATATCGCAAGGGCTGTACGGGCAATGAATGAAACACTAAAGCAAAACCGTCTTATGAGAGAACAAGGGGATGATAGTTCGTTGTCCCATTCTGCAAATGATAGTACTAGCAGTGCAGATCTTCAGAAAAATGTGTCAAATTTCCATCTTGATTATCGCGAAAGTTCCCCCTTATATTCTCTTCACCGAGACCGTGTAACTTCGCAGAAGGCAATGTCGCTACCCACTTCACCACATGATCATAGAGGAGAAGCTTCTGAGAGAAGCACGCCATCAGGATATGGAATGAATGACCAACTGGAGTCGACTTGGAATAAAGTCCTTGGATCACCAATGTTCAATAATAAACCTCTGTTACCATATGAAGAATGGAATATTGACTTCTCAGAATTGACTGTTGGAACTCGTGTTGGGATTGGGTTCTTTGGAGAAGTCTTCCGTGGCTTATGGAATGGTACAGATGTTGCAGTCAAGGTTTTCCTTGAGCAGGATTTAACTGCTGAAAACATGGAAGATTTCTGCAATGAGATATCCATTCTCAGCCGGCTCCGACATCCTAATGTGATCTTATTTCTTGGTGCATGCACAAAGCCTCCACGTTTGTCAATGATTACTGAATATATGGAGATGGGATCTTTGTTTTACTTGATTCATGTGAGCGGTCAAAAGAAGAAGCTTAGCTGGCGGAGGAGATTAAGGATGTTGCGTGACATATGCAGGGGCTTGATGCACATGCATCGTATGAAGATTATTCACCGTGACGTGAAAAGTGCAAATTGTCTAGTGGATAAGCATTGGACAGTGAAAATCTGTGATTTTGGACTTTCGAGAATAATAACAGATTCTCCCATGAAAGATTCTTCCTCAGCTGGAACCCCAGAATGGATGGCACCTGAACTTATTCGAAATGAACCATTCAATGAAAAGTGTGATATCTTTAGCCTGGGAGTTATAATGTGGGAGCTCTGCACCTTGAATAGGCCATGGGAAGGCGTACCTCCAGAGAGGGTGGTTTATGCTGTCGCTAATGAGGGATCCAGATTGGATATTCCTGAAGGCCCGCTGGGCAGGCTGATTTCAGAGTGTTGGGCAGAACCACATGAGCGGCCAAGTTGTGAGGAGATCCTGTCTCGCTTGGTGGACATCGAGTACTCAATGAGCTGA	2469	0.4326	MYKNMEETREDAGPTEQRPSNVWWPSDFIENFGSVSLGSQDEILNNKDSPGHSNQDVMTPQKASQILWRTGMLSEPIPNGFYSVIPEKRLKKYFDGIPTLEELHALGGEGFRADIIVVDAEKDRKLSMLKQLIVALVKGLNSNPAAMIKKIAGLVSDFYKRPHVESPAKTALEESSHMFENRGVQMLGQIRHGSCRPRAILFKVLADTVGLESGLMMGFPNDGAAECVDSYKHMSVIVVLNSVELLVDLMRFPGQLLPRSTKSILMTHISAAGESDSAENDSCDSPLEPNSPLYGVSERLDPESVEKEENLQFHRRFEASSNVSGLPLRNMMLRSNTSLDGKLSLSHSEPNIATAFGRRSRRKAIAEQRTASSSPEHPSFRARGQSKLSGDRAAFRDFSDDQATSRSSYKSDGASSSQARRIRRRSISITPEIGDDIARAVRAMNETLKQNRLMREQGDDSSLSHSANDSTSSADLQKNVSNFHLDYRESSPLYSLHRDRVTSQKAMSLPTSPHDHRGEASERSTPSGYGMNDQLESTWNKVLGSPMFNNKPLLPYEEWNIDFSELTVGTRVGIGFFGEVFRGLWNGTDVAVKVFLEQDLTAENMEDFCNEISILSRLRHPNVILFLGACTKPPRLSMITEYMEMGSLFYLIHVSGQKKKLSWRRRLRMLRDICRGLMHMHRMKIIHRDVKSANCLVDKHWTVKICDFGLSRIITDSPMKDSSSAGTPEWMAPELIRNEPFNEKCDIFSLGVIMWELCTLNRPWEGVPPERVVYAVANEGSRLDIPEGPLGRLISECWAEPHERPSCEEILSRLVDIEYSMS	822

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi2929g00019	822	MobiDBLite	consensus disorder prediction	1	20	-	-
	Gabi2929g00019	822	Gene3D	Transferase(Phosphotransferase) domain 1	645	821	-	-
	Gabi2929g00019	822	CDD	STKc_MAP3K-like	572	814	-	-
	Gabi2929g00019	822	SMART	serkin_6	566	815	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi2929g00019	822	ProSitePatterns	Protein kinases ATP-binding region signature.	572	593	IPR017441	GO:0005524
	Gabi2929g00019	822	SUPERFAMILY	Protein kinase-like (PK-like)	542	814	IPR011009	-
	Gabi2929g00019	822	ProSiteProfiles	Protein kinase domain profile.	566	819	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi2929g00019	822	MobiDBLite	consensus disorder prediction	358	427	-	-
	Gabi2929g00019	822	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	685	697	IPR008271	GO:0004672\|GO:0006468
	Gabi2929g00019	822	MobiDBLite	consensus disorder prediction	453	475	-	-
	Gabi2929g00019	822	Gene3D	Phosphorylase Kinase; domain 1	559	644	-	-
	Gabi2929g00019	822	MobiDBLite	consensus disorder prediction	400	424	-	-
	Gabi2929g00019	822	MobiDBLite	consensus disorder prediction	501	531	-	-
	Gabi2929g00019	822	Pfam	Protein tyrosine and serine/threonine kinase	567	814	IPR001245	GO:0004672\|GO:0006468
	Gabi2929g00019	822	MobiDBLite	consensus disorder prediction	275	297	-	-
	Gabi2929g00019	822	FunFam	Serine/threonine-protein kinase isoform 1	556	644	-	-
	Gabi2929g00019	822	Pfam	Ethylene-responsive protein kinase Le-CTR1	61	256	-	-
	Gabi2929g00019	822	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	349	814	-	-
	Gabi2929g00019	822	MobiDBLite	consensus disorder prediction	460	475	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi2929g00019	Gabi-Chr2929	255850	280064	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi2929g00019	5	821	MAP Kinase Kinase Kinase	AT3G58640	70.000	0.0	1185

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL_CTR1-DRK-1	Gabi2929g00019		PK_Tyr_Ser-Thr	3.1e-61	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi2929g00019	-		-	gmx:100807193	1443.71