Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2929g00017 ATGTATAAGAACATGGAGGAGACACGAGAAGATGCAGGGCCCACAGAGCAAAGGCCATCCAATGTGTGGTGGCCTTCAGATTTCATTGAAAACTTTGGATCTGTTTCTTTGGGTTCTCAAGATGAGATCTTGAATAATAAAGATTCACCTGGACATTCGAACCAAGATGTTATGACACCTCAGAAGGCGTCACAAATTCTCTGGCGCACTGGAATGCTTTCAGAACCGATACCAAATGGTTTTTATTCAGTCATTCCGGAGAAAAGACTCAAGAAATATTTTGATGGTATTCCTACTTTGGAGGAGCTTCATGCTTTGGGTGGAGAGGGTTTTAGGGCTGATATCATTGTTGTGGATGCAGAAAAAGATAGAAAGTTATCTATGTTGAAGCAACTAATTGTGGCATTGGTTAAAGGATTGAACTCAAACCCAGCTGCAATGATTAAGAAGATAGCTGGATTAGTTTCTGATTTCTATAAACGACCACATGTAGAAAGTCCAGCAAAAACTGCACTAGAGGAATCCTCTCACATGTTTGAGAATCGTGGTGTCCAGATGCTGGGGCAAATAAGGCATGGTTCATGCCGTCCTCGAGCCATCTTATTTAAAGTATTAGCAGATACTGTAGGTCTTGAAAGCGGGCTTATGATGGGTTTTCCAAATGATGGGGCTGCTGAATGTGTAGACTCATACAAGCATATGTCTGTGATAGTTGTGTTAAATTCTGTGGAATTGCTGGTTGATCTTATGCGTTTTCCTGGCCAACTGTTGCCCCGATCAACCAAGTCAATTCTTATGACCCACATTTCTGCAGCAGGAGAGAGTGATTCAGCAGAAAATGATTCTTGTGATTCACCACTAGAGCCAAACAGTCCCTTATATGGGGTTTCAGAGAGTGTCGAAAAGGAGGAAAACCTCCAATTCCATAGAAGATTTGAAGCATCTTCAAATGTATCAGGCCTTCCTTTGAGAAATATGATGTTACGATCAAATACCAGTCTGGACGGGAAATTGAGTTTGTCTCATAGTGAACCCAACATTGCAACTGCATTTGGTCGCCGTAGTCGGAGAAAGGCCATTGCTGAACAGAGGACTGCTAGTTCAAGTCCAGAACATCCATCATTTCGAGCACGTGGACAATCCAAGCTTAGTGGTGATAGGGCAGCATTTAGAGATTTTTCTGATGACCAGGCTACATCAAGATCCAGCTATAAGTCAGATGGTGCATCCTCATCACAAGCTCGTAGGATACGAAGAAGAAGCATCAGCATTACACCAGAGATTGGTGATGATATCGCAAGGGCTGTACGGGCAATGAATGAAACACTAAAGCAAAACCGTCTTATGAGAGAACAAGGGGATGATAGTTCGTTGTCCCATTCTGCAAATGATAGTACTAGCAGTGCAGATCTTCAGAAAAATGTGTCAAATTTCCATCTTGATTATCGCGAAAGTTCCCCCTTATATTCTCTTCACCGAGACCGTGTAACTTCGCAGAAGGCAATGTCGCTACCCACTTCACCACATGATCATAGAGGAGAAGCTTCTGAGAGAAGCACGCCATCAGGATATGGAATGAATGACCAACTGGAGTCGACTTGGAATAAAGTCCTTGGATCACCAATGTTCAATAATAAACCTCTGTTACCATATGAAGAATGGAATATTGACTTCTCAGAATTGACTGTTGGAACTCGTGTTGGGATTGGGTTCTTTGGAGAAGTCTTCCGTGGCTTATGGAATGGTACAGATGTTGCAGTCAAGGTTTTCCTTGAGCAGGATTTAACTGCTGAAAACATGGAAGATTTCTGCAATGAGATATCCATTCTCAGCCGGCTCCGACATCCTAATGTGATCTTATTTCTTGGTGCATGCACAAAGCCTCCACGTTTGTCAATGATTACTGAATATATGGAGATGGGATCTTTGTTTTACTTGATTCATGTGAGCGGTCAAAAGAAGAAGCTTAGCTGGCGGAGGAGATTAAGGATGTTGCGTGACATATGCAGGGGCTTGATGCACATGCATCGTATGAAGATTATTCACCGTGACGTGAAAAGTGCAAATTGTCTAGTGGATAAGCATTGGACAGTGAAAATCTGTGATTTTGGACTTTCGAGAATAATAACAGATTCTCCCATGAAAGATTCTTCCTCAGCTGGAACCCCAGAATGGATGGCACCTGAACTTATTCGAAATGAACCATTCAATGAAAAGTGTGATATCTTTAGCCTGGGAGTTATAATGTGGGAGCTCTGCACCTTGAATAGGCCATGGGAAGGCGTACCTCCAGAGAGGGTGGTTTATGCTGTCGCTAATGAGGGATCCAGATTGGATATTCCTGAAGGCCCGCTGGGCAGGCTGATTTCAGAGTGTTGGGCAGAACCACATGAGCGGCCAAGTTGTGAGGAGATCCTGTCTCGCTTGGTGGACATCGAGTACTCAATGAGCTGA 2454 0.4324 MYKNMEETREDAGPTEQRPSNVWWPSDFIENFGSVSLGSQDEILNNKDSPGHSNQDVMTPQKASQILWRTGMLSEPIPNGFYSVIPEKRLKKYFDGIPTLEELHALGGEGFRADIIVVDAEKDRKLSMLKQLIVALVKGLNSNPAAMIKKIAGLVSDFYKRPHVESPAKTALEESSHMFENRGVQMLGQIRHGSCRPRAILFKVLADTVGLESGLMMGFPNDGAAECVDSYKHMSVIVVLNSVELLVDLMRFPGQLLPRSTKSILMTHISAAGESDSAENDSCDSPLEPNSPLYGVSESVEKEENLQFHRRFEASSNVSGLPLRNMMLRSNTSLDGKLSLSHSEPNIATAFGRRSRRKAIAEQRTASSSPEHPSFRARGQSKLSGDRAAFRDFSDDQATSRSSYKSDGASSSQARRIRRRSISITPEIGDDIARAVRAMNETLKQNRLMREQGDDSSLSHSANDSTSSADLQKNVSNFHLDYRESSPLYSLHRDRVTSQKAMSLPTSPHDHRGEASERSTPSGYGMNDQLESTWNKVLGSPMFNNKPLLPYEEWNIDFSELTVGTRVGIGFFGEVFRGLWNGTDVAVKVFLEQDLTAENMEDFCNEISILSRLRHPNVILFLGACTKPPRLSMITEYMEMGSLFYLIHVSGQKKKLSWRRRLRMLRDICRGLMHMHRMKIIHRDVKSANCLVDKHWTVKICDFGLSRIITDSPMKDSSSAGTPEWMAPELIRNEPFNEKCDIFSLGVIMWELCTLNRPWEGVPPERVVYAVANEGSRLDIPEGPLGRLISECWAEPHERPSCEEILSRLVDIEYSMS 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2929g00017 817 MobiDBLite consensus disorder prediction 1 20 - -
Gabi2929g00017 817 ProSitePatterns Protein kinases ATP-binding region signature. 567 588 IPR017441 GO:0005524
Gabi2929g00017 817 MobiDBLite consensus disorder prediction 496 526 - -
Gabi2929g00017 817 MobiDBLite consensus disorder prediction 395 419 - -
Gabi2929g00017 817 SUPERFAMILY Protein kinase-like (PK-like) 537 809 IPR011009 -
Gabi2929g00017 817 MobiDBLite consensus disorder prediction 335 422 - -
Gabi2929g00017 817 Gene3D Phosphorylase Kinase; domain 1 554 639 - -
Gabi2929g00017 817 MobiDBLite consensus disorder prediction 455 470 - -
Gabi2929g00017 817 Gene3D Transferase(Phosphotransferase) domain 1 640 816 - -
Gabi2929g00017 817 SMART serkin_6 561 810 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2929g00017 817 Pfam Protein tyrosine and serine/threonine kinase 562 809 IPR001245 GO:0004672|GO:0006468
Gabi2929g00017 817 ProSiteProfiles Protein kinase domain profile. 561 814 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2929g00017 817 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 344 809 - -
Gabi2929g00017 817 CDD STKc_MAP3K-like 567 809 - -
Gabi2929g00017 817 ProSitePatterns Serine/Threonine protein kinases active-site signature. 680 692 IPR008271 GO:0004672|GO:0006468
Gabi2929g00017 817 MobiDBLite consensus disorder prediction 448 470 - -
Gabi2929g00017 817 Pfam Ethylene-responsive protein kinase Le-CTR1 61 256 - -
Gabi2929g00017 817 FunFam Serine/threonine-protein kinase isoform 1 551 639 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2929g00017 Gabi-Chr2929 255850 280064 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2929g00017 5 816 MAP Kinase Kinase Kinase AT3G58640 69.756 0.0 1175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-1 Gabi2929g00017 PK_Tyr_Ser-Thr 3e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2929g00017 - - gmx:100807193 1449.88