Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2927g00032 ATGGTTTTGAAGGATATGGCTGAGGTGAAATCAGAGGAGTGTTGTATGGAGAATAAACAATCTACTGCTGCTTCATGTTCCTCTGTTTCTGAAGGCAGTGGCAGTGCAATTCACAAGTCTCCAGGGATATGTAGCACAGCATCCGCATCGCCTTCAAATCGAAGGACCACTGGACCTATAAGGCGTGCTAAGGGTGGTTGGACAGCACAGGAGGATGAGACATTAAGGAATGCTGTTGTAGCTTTTAAGGGCAAGAGTTGGAAGAAAATAGCTGAGTTTTTTCCTGATAGATCAGAAGTTCAGTGTCTGCACAGATGGCAAAAAGTTCTTAATCCGGAACTTGTTAAAGGACCTTGGACCCAAGAGGAGGATGTTAAAATTGTTGAACTGGTATCAAAATATGGGCCTACAAAATGGTCTTTGATAGCTAAGTCTTTGCCTGGTCGAATAGGGAAACAGTGTCGAGAGAGGTGGCACAATCATCTTAATCCCGACATAAAGAAGGATGCCTGGACTTTGGAGGAGGAAATGGCCCTGATGAATGCTCATCGCATACATGGGAACAAGTGGGCTGAAATAGCTAAGGTCCTTCCTGGAAGGACTGATAATGCAATAAAGAACCACTGGAATAGTTCTTTGAAAAAAAAGTTGGATTTTTATTTGGCTACAGGAAGACTTCCACCAATTCCAAAGAACAGTCCACAAGTTGCTGTTAAAGATTCAATTAGACAATCTGCTTCTAAAACAATACTTGTTTCTTCAAATAAAGAATTAAATGTAGCTGTTGAAACGTCATCTGAAACTACAGCCATTAGCAAGCTAGATGACTGTGGCAAGAATCAGTTTGAGTCCTCAGGAACAGTTAGAGAAGTTGGTGATTCATCAAGTGTTCCTGCAAATGAATCTGCTGATTCTGACTGTGCAGACATCGATCTTTGTTATAGCAACTCGGAACAAGTGTCAAGAGCTAATTTTGGAATAACTTATGGGCCAAAATCTGAGAATTCTGGACACAATGGATGCTCAACCATTGAGAATTGTATAAATAATGGTGAAATGAGCAGTAACAGGTTAATCAGAACATCTTTTTTGCAAGAAAGTCCAACCTTTGGCTCTTTATGTTATGAGCCACCACAGATAGATGGTTCAGTTCCTTCAGATTCTCTTTATTTAGTTTCCTTGCAGAACAAGTATTGCTCTAATCCAACATTGTCACCTCTTGGTTTTGTTACACCTCGAGTGAAGGATAATGGATTATGCACAGAAACACCTCAATCAATATTGAAAAAGGCTGATGATACTTTTCCAGATGATAGTCCCTCCATATTGACCAGGAGAAGGTCTGCACTCGAAGTACGCACCACTCTTAATAATTTTTTGAAATCAGGTTATGATTCACGTACTTCCAATGAACCAGAGAGTGCCAAGGATAATTCTGGTTCTGAAGTTGGGAGGTTCTCTGACAGTCCAGCAAGCCATGACAATGGGAGTGGCATTCCCAATAATAAAGCATTCAATGCATCTCCACCATACCGGTTAAGATCCAAACGAACAGCGGTTATCAAGTCTGTGGAGAAACAACTTGAGTTTGCATTTGATGAAGAGAAGAATGACGACAGTATCAACTCTAAGGAAAAATCTGCAAAGAGGAGCAATGTGATGACTGAAGATTGTCTGCATGAAACAAAGATGGTATTGACGTAG 1704 0.4073 MVLKDMAEVKSEECCMENKQSTAASCSSVSEGSGSAIHKSPGICSTASASPSNRRTTGPIRRAKGGWTAQEDETLRNAVVAFKGKSWKKIAEFFPDRSEVQCLHRWQKVLNPELVKGPWTQEEDVKIVELVSKYGPTKWSLIAKSLPGRIGKQCRERWHNHLNPDIKKDAWTLEEEMALMNAHRIHGNKWAEIAKVLPGRTDNAIKNHWNSSLKKKLDFYLATGRLPPIPKNSPQVAVKDSIRQSASKTILVSSNKELNVAVETSSETTAISKLDDCGKNQFESSGTVREVGDSSSVPANESADSDCADIDLCYSNSEQVSRANFGITYGPKSENSGHNGCSTIENCINNGEMSSNRLIRTSFLQESPTFGSLCYEPPQIDGSVPSDSLYLVSLQNKYCSNPTLSPLGFVTPRVKDNGLCTETPQSILKKADDTFPDDSPSILTRRRSALEVRTTLNNFLKSGYDSRTSNEPESAKDNSGSEVGRFSDSPASHDNGSGIPNNKAFNASPPYRLRSKRTAVIKSVEKQLEFAFDEEKNDDSINSKEKSAKRSNVMTEDCLHETKMVLT 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2927g00032 567 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 110 IPR017930 -
Gabi2927g00032 567 FunFam Transcription factor MYB3R-2 169 235 - -
Gabi2927g00032 567 PANTHER MYB PROTEIN-RELATED 64 136 - -
Gabi2927g00032 567 MobiDBLite consensus disorder prediction 26 57 - -
Gabi2927g00032 567 SUPERFAMILY Homeodomain-like 61 117 IPR009057 -
Gabi2927g00032 567 MobiDBLite consensus disorder prediction 461 510 - -
Gabi2927g00032 567 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 167 217 IPR017930 -
Gabi2927g00032 567 Gene3D - 169 248 - -
Gabi2927g00032 567 ProSiteProfiles Myb-like domain profile. 163 213 IPR001005 -
Gabi2927g00032 567 FunFam Transcriptional activator Myb isoform A 63 115 - -
Gabi2927g00032 567 CDD SANT 67 110 IPR001005 -
Gabi2927g00032 567 Pfam Myb-like DNA-binding domain 119 179 - -
Gabi2927g00032 567 ProSiteProfiles Myb-like domain profile. 111 162 IPR001005 -
Gabi2927g00032 567 FunFam Transcriptional activator Myb isoform A 116 168 - -
Gabi2927g00032 567 CDD SANT 118 162 IPR001005 -
Gabi2927g00032 567 Gene3D - 116 167 - -
Gabi2927g00032 567 ProSiteProfiles Myb-like domain profile. 59 110 IPR001005 -
Gabi2927g00032 567 Gene3D - 63 115 - -
Gabi2927g00032 567 SMART sant 63 112 IPR001005 -
Gabi2927g00032 567 SMART sant 115 164 IPR001005 -
Gabi2927g00032 567 SMART sant 167 215 IPR001005 -
Gabi2927g00032 567 SUPERFAMILY Homeodomain-like 113 209 IPR009057 -
Gabi2927g00032 567 CDD SANT 170 213 IPR001005 -
Gabi2927g00032 567 MobiDBLite consensus disorder prediction 531 552 - -
Gabi2927g00032 567 Pfam Myb-like DNA-binding domain 64 110 IPR001005 -
Gabi2927g00032 567 MobiDBLite consensus disorder prediction 26 68 - -
Gabi2927g00032 567 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 111 166 IPR017930 -
Gabi2927g00032 567 MobiDBLite consensus disorder prediction 461 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2927g00032 Gabi-Chr2927 400172 409057 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2927g00032 4 546 MYB Transcription Factor Family AT3G09370 49.457 2.94e-156 455
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi2927g00032 Myb_DNA-bind_6 8.3e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2927g00032 K09422 - gmx:778081 857.055