Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2925g00032 ATGGGGGTAGACTACTATAAAGTCCTTCAGGTAGATCGAAGTGCCAAAGATGACGATCTCAAGAAAGCTTATCGCAAGCTTGCCATGAAGTGGCATCCTGATAAGAACCCTAACAACAAAAAAGAAGCTGAAGCCAAATTCAAGCAAATCTCAGAAGCCTATGATGTATGTTTTTGTGTTTTGAGTGATCCACAAAAGCGAGCTGTGTATGATCAGTATGGTGAGGAGGGATTGAAAGGGCAGGTGCCGCCCCCTGGCGCCGGTGGATTTTCTGGTGGAAGTGATGGCGGACCAACGACGTTCCGGTTCAACCCCAGAAGTGCAGATGATATATTTTCGGAGTTCTTCGGGTTTTCAAGCCCCTTTGGTGGAATGGGTGATATGGGTGGTGGTCGTGCTGGTGTATCTGGCTTTCCCAGGGGCATGTTTGGGGATGACATTTTCACTTCTTTTAGGAGTGGGGCTGGAGAAGGCTCTGGTAATGTGCCAAGGAAAAGTGCACCCATAGAGAGAACATTGCAATGCAGTTTGGAAGATTTGTACAAAGGCACTACCAAAAAAATGAAGATTTCCAGGGAGGTTACTGATGCCAGTGGGAGATCCACCACAGTAGAGGAAATTCTAACTATTGAGATCAAGCCAGGATGGAAGAAAGGGACAAAAATAACATTTCCAGAGAAGGGAAATGAACAGAGAGGAATAATACCAGCAGACCTTGTTTTCATTATTGATGAGAAGCCTCATAGTGTCTTCAAAAGGGATGGCAATGATCTTGTTGTCACCCAGAAGATATCTCTTGTAGAAGCTCTGACAGGTTATACGGTGCAACTGACAACCCTCGACGGAAGGAATCTTTCGGTTTCGATCAACTCCATCATTAGTCCAACATATGAAGAAGTTATTAAAGGAGAGGGTATGCCTATTCCCAAGGAACCTTCAAAAAAGGGAAACTTGAAAGTCAAGTTCAATATCAAGTTTCCCTCCAGACTTACATCAGAGCAGAAAACTGGCATTAAGCGATTACTTACATCTTCATAA 1038 0.4412 MGVDYYKVLQVDRSAKDDDLKKAYRKLAMKWHPDKNPNNKKEAEAKFKQISEAYDVCFCVLSDPQKRAVYDQYGEEGLKGQVPPPGAGGFSGGSDGGPTTFRFNPRSADDIFSEFFGFSSPFGGMGDMGGGRAGVSGFPRGMFGDDIFTSFRSGAGEGSGNVPRKSAPIERTLQCSLEDLYKGTTKKMKISREVTDASGRSTTVEEILTIEIKPGWKKGTKITFPEKGNEQRGIIPADLVFIIDEKPHSVFKRDGNDLVVTQKISLVEALTGYTVQLTTLDGRNLSVSINSIISPTYEEVIKGEGMPIPKEPSKKGNLKVKFNIKFPSRLTSEQKTGIKRLLTSS 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2925g00032 345 Gene3D - 248 328 - -
Gabi2925g00032 345 Pfam DnaJ C terminal domain 169 327 IPR002939 -
Gabi2925g00032 345 FunFam Dnaj homolog subfamily b member 165 246 - -
Gabi2925g00032 345 CDD DnaJ_C 167 330 - -
Gabi2925g00032 345 Pfam DnaJ domain 4 71 IPR001623 -
Gabi2925g00032 345 PRINTS DnaJ domain signature 66 85 IPR001623 -
Gabi2925g00032 345 PRINTS DnaJ domain signature 24 39 IPR001623 -
Gabi2925g00032 345 PRINTS DnaJ domain signature 42 62 IPR001623 -
Gabi2925g00032 345 PRINTS DnaJ domain signature 6 24 IPR001623 -
Gabi2925g00032 345 ProSiteProfiles dnaJ domain profile. 4 74 IPR001623 -
Gabi2925g00032 345 SUPERFAMILY HSP40/DnaJ peptide-binding domain 169 248 IPR008971 GO:0006457|GO:0051082
Gabi2925g00032 345 FunFam DnaJ subfamily B member 13 248 328 - -
Gabi2925g00032 345 Gene3D - 168 246 - -
Gabi2925g00032 345 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 342 - -
Gabi2925g00032 345 CDD DnaJ 4 63 IPR001623 -
Gabi2925g00032 345 SUPERFAMILY HSP40/DnaJ peptide-binding domain 250 336 IPR008971 GO:0006457|GO:0051082
Gabi2925g00032 345 Gene3D DnaJ domain 3 127 IPR036869 -
Gabi2925g00032 345 FunFam DnaJ subfamily B member 13 3 126 - -
Gabi2925g00032 345 SMART dnaj_3 3 66 IPR001623 -
Gabi2925g00032 345 SUPERFAMILY Chaperone J-domain 3 77 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2925g00032 Gabi-Chr2925 330245 335241 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2925g00032 5 73 C2H2 Transcription Factor Family AT1G74250 36.986 4.89e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2925g00032 K09510 - qsa:O6P43_016598 561.607