Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2925g00010 ATGCAAAAGTCCTTCAAAGATTCCCTCAAAGCTCTTGAAGCTGACATTCAGTTTGCCAATACTCTAGCTACTGATTATCCAAGAGAATGTGATGGCGCCTGCTTGCAAATGAGATTGTCTTATAGCCCAGCTGCTCAATTTTTCCTTTTTCTGGTTCAATGGACTGATTGTCATCTTGCTGGAGCCTTGGGATTGCTAAGAATTCTCATATACAATGTATATGAGGATGGTAAGACAACCATGTCCATATATGAAAGAAGAGCTAGTCTGAAGGAGTTCTATGGTGTGATCTTTCCCTCTTTATTACAACTCCAAAGAGGAATCACTGATGTAGAAGACAGGAAACAAAAAGAGTTATGCAATACAAAGTACAAGCCAAAAGATATGATAAGAAAAGGAAAACTATCTGAAATTGATATAGAGAGAGAAGAAGAATGTGGTATTTGCATGGAGATGAACAACAAGGTTGTGTTGCCCATGTGCAACCATTCATTGTGTATGAAATGCTACAGAGACTGGCATGCACGATCTCAATCTTGCCCTTTCTGTCGGGACAGTCTTAAAAGAATAAACTCTGGTGACCTCTGGATCTGCATGAACAGCAGTGATATAGATGACTTGGCTTCAATCAACAAGGAGAATTTAAACAGGCTATTTATGTACATTAACAAATTGCCTCTGATGGTGCCAGATCCTATATTCATGTCTTATCCTAAACACTTTTGA 726 0.3871 MQKSFKDSLKALEADIQFANTLATDYPRECDGACLQMRLSYSPAAQFFLFLVQWTDCHLAGALGLLRILIYNVYEDGKTTMSIYERRASLKEFYGVIFPSLLQLQRGITDVEDRKQKELCNTKYKPKDMIRKGKLSEIDIEREEECGICMEMNNKVVLPMCNHSLCMKCYRDWHARSQSCPFCRDSLKRINSGDLWICMNSSDIDDLASINKENLNRLFMYINKLPLMVPDPIFMSYPKHF 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2925g00010 241 SUPERFAMILY RING/U-box 134 189 - -
Gabi2925g00010 241 ProSiteProfiles Zinc finger RING-type profile. 146 184 IPR001841 -
Gabi2925g00010 241 SMART ring_2 146 183 IPR001841 -
Gabi2925g00010 241 FunFam RING/U-box superfamily protein 127 193 - -
Gabi2925g00010 241 PANTHER RING FINGER PROTEIN 41, 151 3 237 - -
Gabi2925g00010 241 Pfam Zinc finger, C3HC4 type (RING finger) 143 189 - -
Gabi2925g00010 241 ProSitePatterns Zinc finger RING-type signature. 161 170 IPR017907 -
Gabi2925g00010 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 193 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2925g00010 Gabi-Chr2925 118151 121306 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2925g00010 87 188 C3H Transcription Factor Family AT5G01960 28.037 7.73e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2925g00010 K25840 - qsa:O6P43_016613 406.371