Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2925g00009 ATGCAAAAGTCCTTCAAAGATTCCCTCAAAGCTCTTGAAGCTGACATTCAGTTTGCCAATACTCTAGCTACTGATTATCCAAGAGAATGTGATGGCGCCTGCTTGCAAATGAGATTGTCTTATAGCCCAGCTGCTCAATTTTTCCTTTTTCTGGTTCAATGGACTGATTGTCATCTTGCTGGAGCCTTGGGATTGCTAAGAATTCTCATATACAATGTATATGAGGATGGTAAGACAACCATGTCCATATATGAAAGAAGAGCTAGTCTGAAGGAGTTCTATGGAATCACTGATGTAGAAGACAGGAAACAAAAAGAGTTATGCAATACAAAGTACAAGCCAAAAGATATGATAAGAAAAGGAAAACTATCTGAAATTGATATAGAGAGAGAAGAAGAATGTGGTATTTGCATGGAGATGAACAACAAGGTTGTGTTGCCCATGTGCAACCATTCATTGTGTATGAAATGCTACAGAGACTGGCATGCACGATCTCAATCTTGCCCTTTCTGTCGGGACAGTCTTAAAAGAATAAACTCTGGTGACCTCTGGATCTGCATGAACAGCAGTGATATAGATGACTTGGCTTCAATCAACAAGGAGAATTTAAACAGGCTATTTATGTACATTAACAAATTGCCTCTGATGGTGCCAGATCCTATATTCATGTCTTATCCTAAACACTTTTGA 690 0.387 MQKSFKDSLKALEADIQFANTLATDYPRECDGACLQMRLSYSPAAQFFLFLVQWTDCHLAGALGLLRILIYNVYEDGKTTMSIYERRASLKEFYGITDVEDRKQKELCNTKYKPKDMIRKGKLSEIDIEREEECGICMEMNNKVVLPMCNHSLCMKCYRDWHARSQSCPFCRDSLKRINSGDLWICMNSSDIDDLASINKENLNRLFMYINKLPLMVPDPIFMSYPKHF 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2925g00009 229 SMART ring_2 134 171 IPR001841 -
Gabi2925g00009 229 SUPERFAMILY RING/U-box 122 177 - -
Gabi2925g00009 229 ProSitePatterns Zinc finger RING-type signature. 149 158 IPR017907 -
Gabi2925g00009 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 181 IPR013083 -
Gabi2925g00009 229 PANTHER RING FINGER PROTEIN 41, 151 3 225 - -
Gabi2925g00009 229 FunFam RING/U-box superfamily protein 115 181 - -
Gabi2925g00009 229 Pfam Zinc finger, C3HC4 type (RING finger) 131 177 - -
Gabi2925g00009 229 ProSiteProfiles Zinc finger RING-type profile. 134 172 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2925g00009 Gabi-Chr2925 118151 121306 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2925g00009 126 171 C3H Transcription Factor Family AT5G41350 38.776 5.70e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2925g00009 K25840 - qsa:O6P43_016613 379.022