Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2925g00006 ATGAAGAATGCAAAGGGCAAGGGAACATTGAAGAACATAAAAGAAACACTCAAGCCCGTTGATGACAGAAAGGTTGGAAAGCGCAAGGCTTCTTATAAGCCTGACAAGAGTAGTGCGCGAAAGCCAGAGAAGGAGAAGAAGGCGAAGAAAGATCCTAACAAGCCAAAAAGACCACCCAGTGCTTTCTTTGTGTTCCTTGAGGAGTTCAGAAAGACCTTTAAGGCAGATAATCCTGGTGTAAAGGCCGTATCAGCGGTTGCGAAAGCTGGAGGAGAGAAATGGAAATCCTTGACTGCTGCTGAGAAAGCTCCATATGAAGCCAAGGCTGCAAAAAGGAAAGCTGAGTATGAAAAACTTATGAATGCTTATAATAAAAAGCAGCAAAGCTCCGCAGATGATGAATCCGACAAGTCCAAATCTGAAGTAAACGATGAAGATGATGAAGCCAGTGGAGAGGAGGACCACCATGACGATGATGACGATGATGAGGACGACGAAGAAGATGATGATGAGGACGACGAATGA 525 0.4457 MKNAKGKGTLKNIKETLKPVDDRKVGKRKASYKPDKSSARKPEKEKKAKKDPNKPKRPPSAFFVFLEEFRKTFKADNPGVKAVSAVAKAGGEKWKSLTAAEKAPYEAKAAKRKAEYEKLMNAYNKKQQSSADDESDKSKSEVNDEDDEASGEEDHHDDDDDDEDDEEDDDEDDE 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2925g00006 174 MobiDBLite consensus disorder prediction 1 59 - -
Gabi2925g00006 174 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 55 124 IPR009071 -
Gabi2925g00006 174 PRINTS High mobility group (HMG1/HMG2) protein signature 89 108 - -
Gabi2925g00006 174 PRINTS High mobility group (HMG1/HMG2) protein signature 17 37 - -
Gabi2925g00006 174 PRINTS High mobility group (HMG1/HMG2) protein signature 108 128 - -
Gabi2925g00006 174 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 5 157 IPR031061 -
Gabi2925g00006 174 SMART hmgende2 54 125 IPR009071 -
Gabi2925g00006 174 MobiDBLite consensus disorder prediction 121 174 - -
Gabi2925g00006 174 Gene3D High mobility group box domain 37 140 IPR036910 -
Gabi2925g00006 174 CDD HMG-box_AtHMGB1-like 56 116 - -
Gabi2925g00006 174 MobiDBLite consensus disorder prediction 145 174 - -
Gabi2925g00006 174 SUPERFAMILY HMG-box 42 125 IPR036910 -
Gabi2925g00006 174 Coils Coil 106 126 - -
Gabi2925g00006 174 Pfam HMG (high mobility group) box 55 124 IPR009071 -
Gabi2925g00006 174 MobiDBLite consensus disorder prediction 8 56 - -
Gabi2925g00006 174 MobiDBLite consensus disorder prediction 129 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2925g00006 Gabi-Chr2925 85042 87947 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Gabi2925g00006 HMG_box 7.3e-24 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2925g00006 K25507 - gmx:100499704 154.451