Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2925g00003 ATGTCTTCCTCTACCGAAAAGCTCGATGTATTTCTTAGCTTTCGAGGAGAGGACACACGCACCAACTTCACTAGCCATCTTTACGCTGCTTTAGAAAAGGAACCAATCGATATATTCATTGATTATGATATGCCAAGAGGAGCAGATGTTTGGCCAACACTTTCCAAAGCGATCCAGAACTCGCGCCTATCGATTGTTATTCTGTCAGAAAATTATGCTACCTCAAAATGGTGCTTGGAAGAACTCCGGGAAATACTCGAATGCAGAAAGCATCTTAGTCAGATTGTTATACCTGTTTTCTATCACACATATCCCTCAGACATAAGGAGGCAGACTGGCACTTACGGGAGAGCATTCGCAAAACATGAGCCACGTCCTGGAGACAAAGACAGCGAGTCCATCAAACAAAAAGTACTTAAGTGGAGACATGCTCTCTTTGAAGCAGGCAATATCTCTGGATGGCCATGTCAAAACCATACGAACGAGACTCAACTCATCAAGGACGTTGTCAAGGATGTACTAGAAAAGCTGGAACTGAGGGAACCTGAAGAGTTAAAAGGAATTATAAGTGAAAAAAACTGTAGAAATGTTGAATTATTAATGAAAAAATTTCGAGTAATTGGAATTTGGGGTATGGGCGGAATAGGTAAGACGACCATTGCTAAAGCCTTGTTTGCCAAACTCTTTCCCCAATATGACAGCAGCTGCTTAGTGCTCAACACAAAAGAATATTCACTTGCTGAGCTTCATTTTGAGCTATTTAAGGAAAAAATTTCCAGATCTAAATTTGTAGGATCCACAATCGATATGACGAGGCTCAAAGGTAAAAATGTTTTCATCGTACTAGATGATGTGGATGATTCAGATCAAATTAAAAATTGGTGTGAAGGGTATCATGGCTTAAGTCAAGCTAGTAGACTCATTATAACAACAGGAGATAGGCAATTGCTTGAGGAAAGTGTTGATTGGATATATGGGGTCGAGGAATGGAAAGCTACAGAATCTCTTAAGTTTTTTTGCTTAGAAGCCTTCAAACAAGACCATCCCATAAAAGGTTATGAGGGTCTCTCAGATTTGGCAGTTGCTTATGCAGGGGGCATTCCATTAGCTCTTAGAGTTTTGGGTTCTCATCTTCGTAACAAAGATATTGAATTTTGGGAAAGTACTTTCAGAAAACTCAACATCAGTCCCGATGAGACAATTCAAAACGTGTTAAGAGTGAGCTATGATGGATTAAAACATAAAACAGAGAAGAAGATTTTTCTAGACATAGCATTTTTTTTCAAAGGAGAAAAGAAAGATCACGTCATAAGGATATTAGATGCCTGTGATTTCGAAGCAATTAGTGGAATAGTAGTCCTTGAAAACAAAGCTTTGATTACTATTTCAAATAGCAATAGAATACAAATGCATGACTTGCTACAAAAAATGGCTTACGAAATAGTACGCAACGAAGATGAAGAAAACCCTGAAGGACGTAGCCGTTTGAGGGATAGTGATGCTTGTGAAGTAATTAAAGAAAACAAGGGGACTAAAGCAATTCAAGGCATAACATTAGATTTGTCTCAAATCACAGCTTTACCTTTGCGTGCTGACACCTTCACAAAGATGAAAGCCTTAAGATTTCTTAAATTCTGTAACCCCTTGGATCAGAATTATAGTAATACATACCTCAAGCTTCCTACAGTTCTTGGGCCATTTTCTGACAAACTGAGGTATGTTGAGTGGATTGGATATCCTTTTGAGTCTCTTCCACGACGTTTTTTTGCTGAGCTGCTTGTTGAGATTCGCATGCCGCACAGCAATGTTAAACAACTTTGGCAGGGGGTGCAGAAACTTGGTAAGTTGGAGGGAATTGACCTAAGTGAATGCAAAGAGTTGGAAAAACTTCCCGATTTGTCTGAGGCGTCAAGACTTAAATGGGTGAATCTATCTGGTTGTAGGAGATTGAGTTATCTTCATCCTTCTGTTTTATCCGCGGATACACTTGTTACTTTGATACTCGATAGGTGTACAAATCTTAAGAGTGTTATAGGCATCAAACATTTGCAGTCTCTGGGGATTATCAGTGTCAAGGGCTGCTCAAGTCTGGAGGAATTTGCAGTGTCTTCGGATTCACTACAAAACTTGGATTTAAGCAATACAGGAATTCAAAGATTGGAAACATCAATAGGGCTTCTACAGAATCTTAAGTGGCTTAATCTAGAGGGTGTAAGACTCACGCATCTTCCGAATGAGTTATCTCGCCTGAAATCTCTTTTGGAGCTGAGACTTTCTTGCCGCGGATTAGTAATTGACAAAGAGCAACTACATGACCTGTTTAATGGGTTACAGTTTCTACAAATACTACATTTGAAGGAGTGTAGTAACTTGTTTGAACTCCCTGACAACATCAGCGTCTTATCAAAAACATTACAGGAATTAAGGCTAGATGGATGCAATGTGACAAAGTTGCCTGAAAGCATCAAGGATCTTGAAAAGCTTGAAATTCTGTCCTTGGAGAATTGCGAGGAGCTTCGGTGTCTACCAGAGCTTCCACCTCTCATCAAACAGTTGTATGCAGTTAACTGCACGTCATTGGTGTCCGTGTCAAATTTAAAGACTTTGGCAACAAAGATGAGAGGAATGGCCAAACACATTTCATTCAAAAACAGCTTGAACTTGGATGCAGATTCACTCAAATGTATTGTGGAAAGCCTACATTTAACAATGATGAGTGCAGCATTGGACAATGTGTTAGTAAGAAGACTCCGTGTGGCCATTCACAGCTACAATTATACAAGTGTTGAGTTTTGTTTACCAGGAAAGAGAGTCCCAAAGCAGGTCAGTTATAGAACAAAAAAGACCTCAATTACCATTGAACTTCCTAGCCGTTCCAACTTGCAGGGCTTCATTTACTCTGTGGTTCTTTCTACAGCCGGTGAAATGATGAAACATGGCACTAAAATAAAATGTGAATGCCCCTTGGCAGAAGGTACAAAGGTTACATGGCTAAAGATTGATATCACGGAATTCAAGTCGGATCATGTTTATGTATGGTATGATCCATTTCATTGTGATGGCATTCTCAAATATTATAAGTCAAAGGTTCGTTTTGACTTCTTCGTTGCAAATGATACGGGGGAAGTTGATGGTTCGATCTGTATTAAAAAGTGTGGAGTACGCCTCATAAGTGTTTCAGAGCTGCACAATGTTTTATTGGAATTGGACTTGGATTCAGATAAGAAAAAGGAATTGGAGAAGGGAATTGAGTTGGAAACAGCACGTAGAATTTCTCTTCTGTGTTTAGTCACAGAACCAAAGTCAGCGACGTTTGAATTAGAATCAGTTGAAGAAGACAATGAAAGTTGGTCTTTTTCTGATGTGGAAGAGAGCATCGAATCTACTCAAAAGGAAACCGAGACCAGTGCAGGAAGAGGTCTCAAGGAGAATACCAGAGATTCTACAAAAGTTGCCAAAAGCAAAGGAAATAAAGCAACGCCAACTGAACCTGGAGCCAGATTGCATGAACTTATTGAGTCACACAAAGGAAATGCTTCTAAACACAAGTCAAGTGAAAATAAGTCTGATTGGACTGATAATATTGAAGAGGCCAAGCATTCAGAAGAAAATCAAAATCTACATGGAGAAGAAATTGTTGATCTGATTGTTGAAGGACCATACCATGCAAAAGAAAGTGAACCAATGGAAGGTCAAGACGGATCCGATGAGGACCATGTTGCTAAACTTTACAGCATCCTGTCGGCAAAAGCAACCTTTTCTACAAACGATGTTGCTATAAGAGAAGCTTTGCATAATCTTGAAAGCCTATTGGAAAACTCGCTTGAGTCCATTCTTGGTGATGTCGAACTACAAGGACAATTACATATGTCTTTGAAATGCATACAACTGGCATCTGAAGAAAAAGTTTCTCCAAATGTTGCGAAGCTTGTTGAAAGCATGACATCCTCTATTGAGGATCTGTTCAAAGACTTTACCTTTACTCAAAAAGTAGTCGAAGAACACACTACCCTTTTGCAACAAAAAGAAAAACTTTTGCAGCTTGTGAGAGATACTAAGAAACGGCAAGAATTACTGAACAAAGAAACGAGTCAGTGTGAGTTTGAAACCGAAAGTCTCGACAAAGAGGCTAAAAAGCTGAATGAAAATATTCAGATTCTTCTTGAGAAAAAGAAAACTGTGGAGTTGAAAAAAAACAAGTTGAAGGAGACCCTGGAAAGATGTGACTTCGAAAAGAAGAAACTGAAAGATGAGGCTAAGAATCGGGTACCTGAAAGCAGAGAGCTAATAGTGGCGATTGAGAAATCTGAATCCTCATACGCTGCTGCCCTGTCAAAGCTGAAGAAGTTGAATAACAAATGGGAAGGTTTCAGAACAACTTTTGCAGAGAACAGTGAAACACTGCTAGCTCATAATACTTGGTGGCATAGAGCCGAAGTACTTTTGATTATATTCATTTTTATTTTTAATATTTTTTTGTCTTACGTGGGTTCTGAAGTTGATCTTCACTCCGAGTAA 4518 0.3915 MSSSTEKLDVFLSFRGEDTRTNFTSHLYAALEKEPIDIFIDYDMPRGADVWPTLSKAIQNSRLSIVILSENYATSKWCLEELREILECRKHLSQIVIPVFYHTYPSDIRRQTGTYGRAFAKHEPRPGDKDSESIKQKVLKWRHALFEAGNISGWPCQNHTNETQLIKDVVKDVLEKLELREPEELKGIISEKNCRNVELLMKKFRVIGIWGMGGIGKTTIAKALFAKLFPQYDSSCLVLNTKEYSLAELHFELFKEKISRSKFVGSTIDMTRLKGKNVFIVLDDVDDSDQIKNWCEGYHGLSQASRLIITTGDRQLLEESVDWIYGVEEWKATESLKFFCLEAFKQDHPIKGYEGLSDLAVAYAGGIPLALRVLGSHLRNKDIEFWESTFRKLNISPDETIQNVLRVSYDGLKHKTEKKIFLDIAFFFKGEKKDHVIRILDACDFEAISGIVVLENKALITISNSNRIQMHDLLQKMAYEIVRNEDEENPEGRSRLRDSDACEVIKENKGTKAIQGITLDLSQITALPLRADTFTKMKALRFLKFCNPLDQNYSNTYLKLPTVLGPFSDKLRYVEWIGYPFESLPRRFFAELLVEIRMPHSNVKQLWQGVQKLGKLEGIDLSECKELEKLPDLSEASRLKWVNLSGCRRLSYLHPSVLSADTLVTLILDRCTNLKSVIGIKHLQSLGIISVKGCSSLEEFAVSSDSLQNLDLSNTGIQRLETSIGLLQNLKWLNLEGVRLTHLPNELSRLKSLLELRLSCRGLVIDKEQLHDLFNGLQFLQILHLKECSNLFELPDNISVLSKTLQELRLDGCNVTKLPESIKDLEKLEILSLENCEELRCLPELPPLIKQLYAVNCTSLVSVSNLKTLATKMRGMAKHISFKNSLNLDADSLKCIVESLHLTMMSAALDNVLVRRLRVAIHSYNYTSVEFCLPGKRVPKQVSYRTKKTSITIELPSRSNLQGFIYSVVLSTAGEMMKHGTKIKCECPLAEGTKVTWLKIDITEFKSDHVYVWYDPFHCDGILKYYKSKVRFDFFVANDTGEVDGSICIKKCGVRLISVSELHNVLLELDLDSDKKKELEKGIELETARRISLLCLVTEPKSATFELESVEEDNESWSFSDVEESIESTQKETETSAGRGLKENTRDSTKVAKSKGNKATPTEPGARLHELIESHKGNASKHKSSENKSDWTDNIEEAKHSEENQNLHGEEIVDLIVEGPYHAKESEPMEGQDGSDEDHVAKLYSILSAKATFSTNDVAIREALHNLESLLENSLESILGDVELQGQLHMSLKCIQLASEEKVSPNVAKLVESMTSSIEDLFKDFTFTQKVVEEHTTLLQQKEKLLQLVRDTKKRQELLNKETSQCEFETESLDKEAKKLNENIQILLEKKKTVELKKNKLKETLERCDFEKKKLKDEAKNRVPESRELIVAIEKSESSYAAALSKLKKLNNKWEGFRTTFAENSETLLAHNTWWHRAEVLLIIFIFIFNIFLSYVGSEVDLHSE 1505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2925g00003 1505 PRINTS Disease resistance protein signature 611 627 - -
Gabi2925g00003 1505 PRINTS Disease resistance protein signature 272 286 - -
Gabi2925g00003 1505 PRINTS Disease resistance protein signature 364 378 - -
Gabi2925g00003 1505 PRINTS Disease resistance protein signature 206 221 - -
Gabi2925g00003 1505 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 199 424 IPR027417 -
Gabi2925g00003 1505 Coils Coil 1433 1453 - -
Gabi2925g00003 1505 Coils Coil 1370 1418 - -
Gabi2925g00003 1505 Gene3D - 2 182 IPR035897 -
Gabi2925g00003 1505 ProSiteProfiles Leucine-rich repeat profile. 706 727 IPR001611 GO:0005515
Gabi2925g00003 1505 Pfam TIR domain 9 183 IPR000157 GO:0007165
Gabi2925g00003 1505 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 9 700 IPR044974 GO:0006952
Gabi2925g00003 1505 SMART till_3 7 151 IPR000157 GO:0007165
Gabi2925g00003 1505 MobiDBLite consensus disorder prediction 1116 1166 - -
Gabi2925g00003 1505 Coils Coil 1342 1362 - -
Gabi2925g00003 1505 Pfam Leucine Rich Repeat 593 611 IPR011713 -
Gabi2925g00003 1505 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 154 IPR035897 -
Gabi2925g00003 1505 Gene3D - 331 413 IPR042197 -
Gabi2925g00003 1505 Gene3D Ribonuclease Inhibitor 705 887 IPR032675 -
Gabi2925g00003 1505 Gene3D Ribonuclease Inhibitor 465 704 IPR032675 -
Gabi2925g00003 1505 Gene3D - 188 322 IPR027417 -
Gabi2925g00003 1505 ProSiteProfiles TIR domain profile. 6 177 IPR000157 GO:0007165
Gabi2925g00003 1505 FunFam Disease resistance protein (TIR-NBS-LRR class) 4 179 - -
Gabi2925g00003 1505 Pfam NB-ARC domain 201 402 IPR002182 GO:0043531
Gabi2925g00003 1505 MobiDBLite consensus disorder prediction 1125 1153 - -
Gabi2925g00003 1505 SUPERFAMILY L domain-like 469 860 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2925g00003 Gabi-Chr2925 32092 47079 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2925g00003 777 874 WRKY Transcription Factor Family AT4G12020 31.633 3.54e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2925g00003 - - cam:101515491 1322.38