Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2924g00008 ATGTCGAACGGCATGGGATTTCAGGAGCAGCATTCGAACCACAACGCGAACAACGCAGCAACGATGATGCGCGGGAATGTCTCCATGACCCAAAAACAAATCGAGACTCTGAGGATACAAATTGCTGCTTACGAAACCCTCTCTGAACAACTCGCTGAGAAGTACAGGGCACACCGTGCCGCTCGCCAAGCTCCTCCTCAAGAATGTGTTAGGGTTGTTTCTGTTAAGAGTTTGTTACACTGGTCTGAGGCGGTTGTAACAAATATACTGAAACAAATGGGTGTGGTGTTTTCAGTGACGTCAGAGGTGGTTAAGCCGGTAAATATGTATGGAGGAGACACATCAAAGGGAATATTTAACATGAAGCCGAGGTGGAGTCCAACAACTGAGCAGCTTCAGATCATGGAGAAAATATTTAAGCAGGTGACACCGAATCCAGACAGGAAAATGATAAACGAAATTATTACTGCGGAACTCGCCAATCATGGAAATATTTCGGAGAAAAATGTCTGTAATTGGTTCCAGAATAAGCGTGCTCGGTCCAAGAAAAAACAGCCCAATGCGGTTATTGCAAATAATGTTAACACTAATGGCCGGTTGACATCAGGAGATAGCCGCTATCAAATGAAATAA 633 0.4439 MSNGMGFQEQHSNHNANNAATMMRGNVSMTQKQIETLRIQIAAYETLSEQLAEKYRAHRAARQAPPQECVRVVSVKSLLHWSEAVVTNILKQMGVVFSVTSEVVKPVNMYGGDTSKGIFNMKPRWSPTTEQLQIMEKIFKQVTPNPDRKMINEIITAELANHGNISEKNVCNWFQNKRARSKKKQPNAVIANNVNTNGRLTSGDSRYQMK 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2924g00008 210 SMART HOX_1 120 188 IPR001356 GO:0003677
Gabi2924g00008 210 CDD homeodomain 122 185 IPR001356 GO:0003677
Gabi2924g00008 210 Gene3D - 123 188 - -
Gabi2924g00008 210 ProSiteProfiles 'Homeobox' domain profile. 118 184 IPR001356 GO:0003677
Gabi2924g00008 210 MobiDBLite consensus disorder prediction 182 210 - -
Gabi2924g00008 210 SUPERFAMILY Homeodomain-like 121 188 IPR009057 -
Gabi2924g00008 210 PANTHER WUSCHEL-RELATED HOMEOBOX 13 12 195 IPR044559 GO:0003700
Gabi2924g00008 210 MobiDBLite consensus disorder prediction 186 210 - -
Gabi2924g00008 210 Pfam Homeodomain 122 183 IPR001356 GO:0003677
Gabi2924g00008 210 Coils Coil 34 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2924g00008 Gabi-Chr2924 34408 35184 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2924g00008 29 205 Wox Gene Family AT1G20700 35.829 1.27e-26 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Gabi2924g00008 Homeodomain 1.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2924g00008 - - cic:CICLE_v10026199mg 98.2117