Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2924g00004 ATGTCGAACGGCATGGGATTTCAGGAGCAGCATTCGAACCACAACGCGAACAACGCAGCAACGATGATGCGCGGGAATGTCTCCATGACCCAAAAACAAATCGAGACTCTGAGGATACAAATTGCTGCTTACGAAACCCTCTCTGAACAACTCGCTGAGAAGTACAGGGCACACCGTGCCGCTCGCCAAGCTCCTCCTCAAGTGACGTCAGAGGTGGTTAAGCCGGTAAATATGTATGGAGGAGACACATCAAAGGGAATATTTAACATGAAGCCGAGGTGGAGTCCAACAACTGAGCAGCTTCAGATCATGGAGAAAATATTTAAGCAGGTGACACCGAATCCAGACAGGAAAATGATAAACGAGATTACTGCGGAACTCGCCAATCATGGAAATATTTCGGAGAAAAATGTCTGTAATTGGTTCCAGAATAAGCGTGCTCGGTCCAAGAAAAAACAGCCCAATGCGGTTATTGCAAATAATGTTAACACTAATGGCCGGTTGACATCAGGAGATAGCCGCTATCAAATGAAATAA 537 0.4581 MSNGMGFQEQHSNHNANNAATMMRGNVSMTQKQIETLRIQIAAYETLSEQLAEKYRAHRAARQAPPQVTSEVVKPVNMYGGDTSKGIFNMKPRWSPTTEQLQIMEKIFKQVTPNPDRKMINEITAELANHGNISEKNVCNWFQNKRARSKKKQPNAVIANNVNTNGRLTSGDSRYQMK 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2924g00004 178 Gene3D - 92 156 - -
Gabi2924g00004 178 SMART HOX_1 89 156 IPR001356 GO:0003677
Gabi2924g00004 178 CDD homeodomain 91 153 IPR001356 GO:0003677
Gabi2924g00004 178 SUPERFAMILY Homeodomain-like 90 156 IPR009057 -
Gabi2924g00004 178 PANTHER WUSCHEL-RELATED HOMEOBOX 13 12 163 IPR044559 GO:0003700
Gabi2924g00004 178 ProSiteProfiles 'Homeobox' domain profile. 87 152 IPR001356 GO:0003677
Gabi2924g00004 178 MobiDBLite consensus disorder prediction 147 178 - -
Gabi2924g00004 178 Coils Coil 34 54 - -
Gabi2924g00004 178 MobiDBLite consensus disorder prediction 154 178 - -
Gabi2924g00004 178 Pfam Homeodomain 91 151 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2924g00004 Gabi-Chr2924 22277 23049 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2924g00004 29 173 Wox Gene Family AT1G20700 39.735 1.19e-31 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Gabi2924g00004 Homeodomain 9.5e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2924g00004 - - cic:CICLE_v10026199mg 113.62