Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2924g00002 ATGTCGAACGACATGGGATTTCAGGAGCAGCATTCGAACCACAACGCGAACAACGCAGCAACGATGATGCGCGGGAATGTCTCCATGACCCAAAAACAAATCGAGACTCTGAGGATACAAATTGCTGCTTACGAAACCCTCTCTGAACAACTCGCTGAGAAGTACAGGGCACACCGTGCCGCTCGCCAAGCTCCTCCTCAAGAATGTGTTAGGGTTGTTTCTGTTAAGAGTTTGTTACACTGGTCTGAGGCGGTTGTAACAAATATACTGAAACAAATGGGTGTGGTGTTTTCAGTGACGTCAGAGGTGGTTAAGCCGGTAAATATGTATGGAGGAGACACATCAAATGGAATATTTAACATGAAGCCGAGGTGGAGTCCAACAACTGAGCAGCTTCAGATCATGGAGAAAATATTTAAGCAGGTGACACCGAATCCAGACAGGAAAATGATAAACGAGATTACTGCGGAACTCGCCAATCATGGAAATATTTCGGAGAAAAATGTCTGTAATTGGTTCCAGAATAAGCGTGCTCGGTCCAAGAAAAAACAGCCCAATGCGGTTATTGCAAATAATGTTAACACTAATGGCCGGTTGACATCAGGAGATAGCCGCTATCAAATGAAATAA 630 0.4444 MSNDMGFQEQHSNHNANNAATMMRGNVSMTQKQIETLRIQIAAYETLSEQLAEKYRAHRAARQAPPQECVRVVSVKSLLHWSEAVVTNILKQMGVVFSVTSEVVKPVNMYGGDTSNGIFNMKPRWSPTTEQLQIMEKIFKQVTPNPDRKMINEITAELANHGNISEKNVCNWFQNKRARSKKKQPNAVIANNVNTNGRLTSGDSRYQMK 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2924g00002 209 MobiDBLite consensus disorder prediction 181 209 - -
Gabi2924g00002 209 Gene3D - 123 187 - -
Gabi2924g00002 209 Pfam Homeodomain 122 182 IPR001356 GO:0003677
Gabi2924g00002 209 ProSiteProfiles 'Homeobox' domain profile. 118 183 IPR001356 GO:0003677
Gabi2924g00002 209 SMART HOX_1 120 187 IPR001356 GO:0003677
Gabi2924g00002 209 MobiDBLite consensus disorder prediction 185 209 - -
Gabi2924g00002 209 CDD homeodomain 122 184 IPR001356 GO:0003677
Gabi2924g00002 209 PANTHER WUSCHEL-RELATED HOMEOBOX 13 11 194 IPR044559 GO:0003700
Gabi2924g00002 209 SUPERFAMILY Homeodomain-like 121 187 IPR009057 -
Gabi2924g00002 209 Coils Coil 34 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2924g00002 Gabi-Chr2924 3520 4293 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2924g00002 29 204 Wox Gene Family AT1G20700 35.484 5.35e-28 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Gabi2924g00002 Homeodomain 1.3e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2924g00002 - - cic:CICLE_v10026199mg 102.834