Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2924g00001 ATGGGTGTGGTGTTTTCAGTGACGTCAGAGGTGGTTAAGCCGGTAAATATGTATGGAGGAGACACATCAAAGGGAATATTTAACATGAAGCCGAGGTGGAGTCCAACAACTGAGCAGCTTCAGATCATGGAGAAAATATTTAAGCAGGTGACACCGAATCCAGACAGGAAAATGATAAACGAGATTACTGCGGAACTCGCCAATCATGGAAATATTTCGGAGAAAAATGTCTGTAATTGGTTCCAGAATAAGCGTGCTCGGTCCAAGAAAAAACAGCCCAATGCGCATTCGAACCACAACGCGAACAACGCAGCAACGATGATGCGCGGGAATGTCTCCATGACCCAAAAACAAATCGAGACTCTGAGGATACAAATTGCTGCTTACGAAACCCTCTCTGAACAACTCGCTGAGAAGTACAGGGCACACCGTGCCGCTCGCCAAGCTCCTCCTCAAGTGACGTCAGAGGTGGTTAAGCCGGTAAATATGTATGGAGGAGACACATCAAAGGGAATATTTAACATGAAGCCGAGGTGGAGTCCAACAACTGAGCAGCTTCAGATCATGGAGAAAATATTTAAGCAGGTGACACCGAATCCAGACAGGAAAATGATAAACGAGATTACTGCGGAACTCGCCAATCATGGAAATATTTCGGAGAAAAATGTCTGTAATTGGTTCCAGAATAAGCGTGCTCGGTCCAAGAAAAAACAGCCCAATGCGGTTATTGCAAATAATGTTAACACTAATGGCCG 755 0.4503 MGVVFSVTSEVVKPVNMYGGDTSKGIFNMKPRWSPTTEQLQIMEKIFKQVTPNPDRKMINEITAELANHGNISEKNVCNWFQNKRARSKKKQPNAHSNHNANNAATMMRGNVSMTQKQIETLRIQIAAYETLSEQLAEKYRAHRAARQAPPQVTSEVVKPVNMYGGDTSKGIFNMKPRWSPTTEQLQIMEKIFKQVTPNPDRKMINEITAELANHGNISEKNVCNWFQNKRARSKKKQPNAVIANNVNTNGR 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2924g00001 252 Coils Coil 119 139 - -
Gabi2924g00001 252 CDD homeodomain 30 92 IPR001356 GO:0003677
Gabi2924g00001 252 SUPERFAMILY Homeodomain-like 175 241 IPR009057 -
Gabi2924g00001 252 ProSiteProfiles 'Homeobox' domain profile. 172 237 IPR001356 GO:0003677
Gabi2924g00001 252 CDD homeodomain 176 238 IPR001356 GO:0003677
Gabi2924g00001 252 ProSiteProfiles 'Homeobox' domain profile. 26 91 IPR001356 GO:0003677
Gabi2924g00001 252 Gene3D - 177 241 - -
Gabi2924g00001 252 Gene3D - 31 100 - -
Gabi2924g00001 252 MobiDBLite consensus disorder prediction 85 104 - -
Gabi2924g00001 252 SUPERFAMILY Homeodomain-like 29 96 IPR009057 -
Gabi2924g00001 252 SMART HOX_1 174 241 IPR001356 GO:0003677
Gabi2924g00001 252 SMART HOX_1 28 95 IPR001356 GO:0003677
Gabi2924g00001 252 Pfam Homeodomain 176 236 IPR001356 GO:0003677
Gabi2924g00001 252 Pfam Homeodomain 30 90 IPR001356 GO:0003677
Gabi2924g00001 252 PANTHER WUSCHEL-RELATED HOMEOBOX 13 100 245 IPR044559 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2924g00001 Gabi-Chr2924 37 1845 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2924g00001 114 246 Wox Gene Family AT1G20700 40.602 1.77e-29 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Gabi2924g00001 Homeodomain 1.9e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2924g00001 - - qsa:O6P43_033511 112.079