Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2923g00029 ATGGCATTCTGTAATAAGGTTGGAAATTTCTTGAAGAACAGTGCTGCTCAGAGCAGACAAGCGCCTGTTACATCCATGCTTAATTATATCCGCTGCATGTCCTCCAGCAAGCTTTTCGTTGGAGGCCTTTCATATGGAGTTGATGACCAGTCTCTTAAGGATGCATTTGCTAGCTTTGGAGATGTGGTTGAGGCAAGGGTTATCACTGATAGAGAAACTGGAAGGTCAAGGGGATTTGGATTTGTCAACTACTCCAGTGATGAGTCTGCAACTTCAGCACTCTCTGCGATGGATGGGCAGGATCTAGATGGGCGTAACATTCGGGTGACCTATGCAAATGATAGACCTTCTGGACCTCGATCTCCTGGTGGCGGTGGTTATGGTGGCGGTGGTTATGGTGGCGGTGATCGTAGGAGTGGTGGTTGGTGA 429 0.4825 MAFCNKVGNFLKNSAAQSRQAPVTSMLNYIRCMSSSKLFVGGLSYGVDDQSLKDAFASFGDVVEARVITDRETGRSRGFGFVNYSSDESATSALSAMDGQDLDGRNIRVTYANDRPSGPRSPGGGGYGGGGYGGGDRRSGGW 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2923g00029 142 SUPERFAMILY RNA-binding domain, RBD 32 141 IPR035979 GO:0003676
Gabi2923g00029 142 Gene3D - 12 142 IPR012677 -
Gabi2923g00029 142 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 32 136 - -
Gabi2923g00029 142 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 108 IPR000504 GO:0003723
Gabi2923g00029 142 FunFam Glycine-rich RNA-binding protein 2 25 142 - -
Gabi2923g00029 142 SMART rrm1_1 37 110 IPR000504 GO:0003723
Gabi2923g00029 142 MobiDBLite consensus disorder prediction 109 142 - -
Gabi2923g00029 142 CDD RRM2_NsCP33_like 37 112 - -
Gabi2923g00029 142 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2923g00029 Gabi-Chr2923 289282 291105 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2923g00029 35 117 Eukaryotic Initiation Factors Gene Family AT1G49760 42.169 3.54e-14 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2923g00029 - - gmx:100527220 194.126