Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2923g00020 ATGGATGCCTCTGGCGGCGGCGGTGGTCCGGCACCGTTCCTACAGAAGACATACGAGATGGTGGATGATTCATCGACTGACGAGGTAGTATCATGGAGCTCCACAAACAACAGCTTCATCGTGTGGAACCCAGCAGAGTTCGGTCGTGTTCTTCTTCCAACCTATTTCAAACACAACAACTTCTCCAGCTTCATCCGTCAGCTTAATACCTATGGATTTCGAAAAATACATCCTGAGCGATGGGAGTTCGCTAATGATGATTTTGTGAAAGATCAAAAGCATCTTCTTAAGAATATTCACCGCAGGAAACCTATCCACAGTCACAGTCATCCTCCAGGTTCTCTGGTGGATCCAGAAAGGTCATCATTTGAGGAAGAAATAGAGAAACTTTCACTTGAGAAAACTACCATTGAATCCAATATTTTTGGCTTCAAACAAGATGAGTCAGCTGCAAAGCTTCATCTGGAAGATATGCAGCAGCGATTAGATGATGTGGAGAAGAGGCAGAAAAATTTGCTCAGCTTCTTCGAAAAGGCTCTTCACAATCCTACTTTTGTTGAACAAATTTCTCGCAAAATTGAGTCCATGGATTTATCAGCATATAACAAGAAAAGGCGATTGCCTCAGGTTGATCATTTGCAGCCTGTTGCTGAAAATATCTTTGTTGACAACAATAGCAATTCTAGAATGGAATTTGGAAATATTTTCCATCAAGATTTCTCAAATAAACTCAGACTGGAATTGTCACCAGCTGTTTCAGATATGAACTTGGTATCATGCAGTACACAGAGTTCAAATGAAGATGGAGAAAGCCCACATAAGATGCTATCTAGAGGAGAACCAATAGAAGTGCAGACAAGAACAGCTCTTGGATTTGCACCTGAAACATTAGACCTTGCGGATACTGGAACATCTTTTACTTTTAAGATGGATTCATGTTTATCACAAAGAGCTACAGCTGCTGAGAGCCTGCACTTGTTGAAACCAAATTGTGAAGAAGGTGATAGTTATATATCCTGCCTTTTAAACCTAAGCCTGGCATCTTCTACGTTACAAGTCAAAAGAAATTCATGCACGGAAAGATCACCCCAAATGAACTGTCCCGAAATTGGCAATTTGGCTGAATCAAGATTTTATGCCAATGATAAAGAGCATGATGGTGGAGCTTCTTCAAACATAAATGTGGCTAATGAGGTTAATAATTTAGCTTCATCAGACGAGGCTCCTAGTAACAACCAAGGGACCACAGCTGCTCCAGCTAGAGTAAATGATGTGTTTTGGGAACAGTTCCTTACAGAAAGACCAGGCTGA 1311 0.4119 MDASGGGGGPAPFLQKTYEMVDDSSTDEVVSWSSTNNSFIVWNPAEFGRVLLPTYFKHNNFSSFIRQLNTYGFRKIHPERWEFANDDFVKDQKHLLKNIHRRKPIHSHSHPPGSLVDPERSSFEEEIEKLSLEKTTIESNIFGFKQDESAAKLHLEDMQQRLDDVEKRQKNLLSFFEKALHNPTFVEQISRKIESMDLSAYNKKRRLPQVDHLQPVAENIFVDNNSNSRMEFGNIFHQDFSNKLRLELSPAVSDMNLVSCSTQSSNEDGESPHKMLSRGEPIEVQTRTALGFAPETLDLADTGTSFTFKMDSCLSQRATAAESLHLLKPNCEEGDSYISCLLNLSLASSTLQVKRNSCTERSPQMNCPEIGNLAESRFYANDKEHDGGASSNINVANEVNNLASSDEAPSNNQGTTAAPARVNDVFWEQFLTERPG 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2923g00020 436 Gene3D - 8 103 IPR036388 -
Gabi2923g00020 436 PRINTS Heat shock factor (HSF) domain signature 51 63 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi2923g00020 436 PRINTS Heat shock factor (HSF) domain signature 13 36 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi2923g00020 436 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi2923g00020 436 Coils Coil 148 175 - -
Gabi2923g00020 436 ProSitePatterns HSF-type DNA-binding domain signature. 52 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi2923g00020 436 Pfam HSF-type DNA-binding 13 102 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi2923g00020 436 Coils Coil 120 140 - -
Gabi2923g00020 436 SUPERFAMILY "Winged helix" DNA-binding domain 9 102 IPR036390 -
Gabi2923g00020 436 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 7 263 IPR027725 -
Gabi2923g00020 436 SMART hsfneu3 9 102 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi2923g00020 436 FunFam Heat shock transcription factor 1 6 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2923g00020 Gabi-Chr2923 197306 199642 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2923g00020 13 436 HSF AT4G13980 55.814 2.08e-153 441
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gabi2923g00020 HSF_DNA-bind 2.6e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2923g00020 K09419 - gmx:100816484 667.151