Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2923g00005 ATGGCTGATCCTGAATTAAAATCCAAAAGCCTAGTTTCTCTCTCTAAGCTTTTTTTGTGCTTCTCTCTCCTCTCCACCGTCGCCGTCGCCGACGATGGTCCGTTCATGTCGAAGCTGGCGAAAGCCATCGGCCCAAGCGGGTGGTCGGCGACGACCGCTTTCTGCAACTGGAGCGGCGTGAAGTGTGACAGTTCGAACCGTGTAACAAGCATCAATCTGGCTTCAAAGAAACTCAGTGGAACACTCCCACCCGATCTGAACTCACTCTCTCAACTCACCTACCTCTCGCTTCAGGGCAACTCTCTCTCCGGTTCCTTACCCTCTTTGGCGAACCTCACCATGCTCGTAACCGTTTACCTCGACGGCAACAACTTCACCTCCGTCACTAACGGTTGCTTCCAGGGGCTAACGAACTTGCAGAACATTAGCATGACCAACAACATCAACCTCGCACCCTGGACGTTTCCCACCGAGTTGACTCAGTCATCCAACCTCCTCCAACTCGACCTCGGTAACACAAACCTCATGAGTTCCTTGCCTGATGTGTTCGGTTCCTTTGTCACTTTGCAGGGTCTTCGTCTCTCTTACAACAACCTCACCGGTGGTTTGCCAAAGTCCTTTGCAGGATCTGGGATTCAGAATTTGTGGCTCAACAATCAGATAGATGGGTCTGGGTTTTCTGGTTCAATTGATGTGCTTTCTTCCATGACACGCTTGTCTCAGGTGTGGCTTCACAAGAACCAGTTCACGGGCCCCATTCCTGATTTGTCAAATTGTACTAGTTTGTTTGATCTTCAGCTTAGGGACAATCAGTTAACCGGTGTTGTTCCATCTTCTTTGATGGGTCTCTCTAGCTTACAGAGCGTTTCTTTGGACAACAACTTGCTTCAGGGTCCTGTTCCTGTGTTTGGGAAAGGTGTGAAGTTCCCTCTTGATGGGATCAATAGCTTTTGTCAATCAAGTCCTGGTGTGCCTTGTGATCCCATTGCCACTACTTTGCTTGATGTTGCTGCGGGTTTTGGGTATCCCCTTCAGTTGGCCAGTGCCTGGAAAGGGAACAACACTTGTCAAGATTGGAGCTTCATTGTGTGTGCTGGGGGAAAGATTATTACGGTGAATTTAGCAAAGCAGAATTTGACTGGAACCATTTCATCTGCATTTGCCAATTTAACTGATTTGAGGAACTTGTTTCTCAATGATAATAATTTGGTTGGTTCAATACCTGGGAGCTTGACAACTTTGCCTCAACTTGAGGTTCTGAATGTGTCTAATAACAACCTATCTGGAGAGATTCCCAATTTCTCAGCTAAGGTGAAGTTCCTTCATGCAGGTAATGTTTTGCTTGGTCATCCTGGAGATGGAGGCAGTGGAACTAGTCCATCATCGGGTTCTGGTAATGCGCCGAGTGGAAGTCCATCTAAAACAGCAAATAGTTCTTCCCTGTCTCCTGCTTGGATCGCAGGTATAGCCATTATTGCTGTATTTTTCGTTGTGGTGGTGTTGTTTGTCTTTTGCAAGTGTTATGCCAAAAACCGGAAGGGGAAATTCGGAAGGGTTAATAATCCTGAAAATGGAAAAGTAGACATTAAAACTGATGTAATGAGTGTTGTCAATTCCAATGGATATGGTGGAGTTCCCAGCGATATACAAAGCCAGGGCAGTGAGCTTAGTGACCTTCATGCTTTTGAGGGTGGAAATGCTACAATTTCAATCCAAGTTCTTCGGCAAGTAACGAGTAATTTCAGCGAAGACAACATTTTGGGTAGGGGAGGATTTGGAGTTGTTTATAAAGGGGAATTGCATGATGGAACTAAAATTGCTGTGAAGAGGATGGAGTCTGGTCCAATTGGAAGTAAAGGAATGAATGAGTTCCAAGCAGAGATTGCAGTTCTCACTAAAGTTAGGCATAGGCATTTGGTTGCTCTTTTAGGATATTGCATGAATGGCAATGAAAGGCTTTTGGTGTACGAGTATATGCCTCAAGGGACATTAACAGAGCATCTGTTTGATTGGCGTGAAAATGGCTGTGCTCCTTTGACTTGGAAACAAAGGATCGCAATAGCTTTGGATGTAGCTCGGGGAGTTGAATACTTGCACAGCTTAGCTCAGCAAAGCTTCATTCACAGAGACTTGAAACCCTCAAACATACTATTGGCTGATGACATGAGAGCAAAGGTTGCAGATTTTGGGTTGGTAAAAAATGCACCGGATGGGAAGTACTCTGTCGAGACGCGGTTGGCTGGAACATTTGGATATCTTGCACCTGAATATGCAGCTACTGGAAGAGTGACAACAAAAGTAGATGTTTACGCATTTGGAGTAGTTTTGATGGAACTGATTACCGGTAGAAGGGCATTGGATGATACTGTACCTGATGAAAGGTCTCACTTAGTTTCATGGTTCCGTAGGGTACTAATTAACAAGGAGAACATCCCAAAGGCAATTGATCAAATTCTCAACCCTGATGAGGAAACCATGGAGAGCATATATAAAGTGGCTGAGCTGGCAGGCCATTGCACTGCTCGTGAACCATACCAAAGACCAGATATGGGGCATGCAGTGAATGTCTTGGTTCCTCTGGTAGAACAATGGAAGCCTACAAGCCATGAAGAAGAAGAAGGTTCTGGCATTGACCTTCACATGAGCCTTCCTCAAGCTCTTCAAAGATGGCAAGCCAATGAAGGAACTTCCACAATGTTTAATGACATGTCCATCTCTCAAACCCAGTCAAGCATTCCTGCAAAGCCTTCAGGATTTGCAGACTCCTTTGATTCAATGGATTGCCGGTAG 2790 0.4548 MADPELKSKSLVSLSKLFLCFSLLSTVAVADDGPFMSKLAKAIGPSGWSATTAFCNWSGVKCDSSNRVTSINLASKKLSGTLPPDLNSLSQLTYLSLQGNSLSGSLPSLANLTMLVTVYLDGNNFTSVTNGCFQGLTNLQNISMTNNINLAPWTFPTELTQSSNLLQLDLGNTNLMSSLPDVFGSFVTLQGLRLSYNNLTGGLPKSFAGSGIQNLWLNNQIDGSGFSGSIDVLSSMTRLSQVWLHKNQFTGPIPDLSNCTSLFDLQLRDNQLTGVVPSSLMGLSSLQSVSLDNNLLQGPVPVFGKGVKFPLDGINSFCQSSPGVPCDPIATTLLDVAAGFGYPLQLASAWKGNNTCQDWSFIVCAGGKIITVNLAKQNLTGTISSAFANLTDLRNLFLNDNNLVGSIPGSLTTLPQLEVLNVSNNNLSGEIPNFSAKVKFLHAGNVLLGHPGDGGSGTSPSSGSGNAPSGSPSKTANSSSLSPAWIAGIAIIAVFFVVVVLFVFCKCYAKNRKGKFGRVNNPENGKVDIKTDVMSVVNSNGYGGVPSDIQSQGSELSDLHAFEGGNATISIQVLRQVTSNFSEDNILGRGGFGVVYKGELHDGTKIAVKRMESGPIGSKGMNEFQAEIAVLTKVRHRHLVALLGYCMNGNERLLVYEYMPQGTLTEHLFDWRENGCAPLTWKQRIAIALDVARGVEYLHSLAQQSFIHRDLKPSNILLADDMRAKVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKVDVYAFGVVLMELITGRRALDDTVPDERSHLVSWFRRVLINKENIPKAIDQILNPDEETMESIYKVAELAGHCTAREPYQRPDMGHAVNVLVPLVEQWKPTSHEEEEGSGIDLHMSLPQALQRWQANEGTSTMFNDMSISQTQSSIPAKPSGFADSFDSMDCR 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2923g00005 929 MobiDBLite consensus disorder prediction 907 929 - -
Gabi2923g00005 929 Gene3D Ribonuclease Inhibitor 329 450 IPR032675 -
Gabi2923g00005 929 Pfam Protein tyrosine and serine/threonine kinase 584 854 IPR001245 GO:0004672|GO:0006468
Gabi2923g00005 929 FunFam Leucine-rich repeat receptor-like kinase 328 451 - -
Gabi2923g00005 929 FunFam receptor protein kinase TMK1 659 876 - -
Gabi2923g00005 929 Gene3D Transferase(Phosphotransferase) domain 1 659 880 - -
Gabi2923g00005 929 MobiDBLite consensus disorder prediction 455 475 - -
Gabi2923g00005 929 SUPERFAMILY L domain-like 52 435 - -
Gabi2923g00005 929 SMART serkin_6 581 861 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2923g00005 929 ProSitePatterns Serine/Threonine protein kinases active-site signature. 706 718 IPR008271 GO:0004672|GO:0006468
Gabi2923g00005 929 CDD STKc_IRAK 587 860 - -
Gabi2923g00005 929 ProSiteProfiles Leucine-rich repeat profile. 91 113 IPR001611 GO:0005515
Gabi2923g00005 929 MobiDBLite consensus disorder prediction 452 475 - -
Gabi2923g00005 929 FunFam receptor protein kinase TMK1 545 658 - -
Gabi2923g00005 929 Gene3D Ribonuclease Inhibitor 34 317 IPR032675 -
Gabi2923g00005 929 ProSiteProfiles Protein kinase domain profile. 581 861 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2923g00005 929 Gene3D Phosphorylase Kinase; domain 1 545 658 - -
Gabi2923g00005 929 FunFam Receptor-like kinase TMK4 30 323 - -
Gabi2923g00005 929 SUPERFAMILY Protein kinase-like (PK-like) 559 857 IPR011009 -
Gabi2923g00005 929 PANTHER OSJNBA0070M12.3 PROTEIN 17 929 - -
Gabi2923g00005 929 Pfam Leucine rich repeat N-terminal domain 46 63 IPR013210 -
Gabi2923g00005 929 Pfam Leucine rich repeat N-terminal domain 331 364 IPR013210 -
Gabi2923g00005 929 ProSitePatterns Protein kinases ATP-binding region signature. 587 609 IPR017441 GO:0005524
Gabi2923g00005 929 SMART LRR_typ_2 283 306 IPR003591 -
Gabi2923g00005 929 SMART LRR_typ_2 414 437 IPR003591 -
Gabi2923g00005 929 SMART LRR_typ_2 186 209 IPR003591 -
Gabi2923g00005 929 SMART LRR_typ_2 89 111 IPR003591 -
Gabi2923g00005 929 SMART LRR_typ_2 112 135 IPR003591 -
Gabi2923g00005 929 Pfam Leucine rich repeat 371 427 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2923g00005 Gabi-Chr2923 60292 63565 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2923g00005 68 857 Receptor kinase-like Gene Family AT5G07280 32.195 3.98e-92 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Gabi2923g00005 PK_Tyr_Ser-Thr 2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2923g00005 K00924 - gmx:100781851 1439.48