Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2923g00002 ATGGCTGACTCCAAATTAAAATCCAAAAGCCTAGTTTCTCTCTCTAAGCTTTTTCTGTGCTTCTCTCTCCTCTCCACTGCCGCCGTAGCCGATGATAGTGCGTTCATGTCGAAGCTGGCGAAAGCCATCGGCCCAAGTGGGTGGTCGGCGACCACCGCATTCTGCAACTGGAGCGGCGTGAAGTGTGATAGTTCGAACCGTGTAATAACCATCAATCTGTCTTCAAAGAAACTCAGTGGAACACTGCCACCCGATCTGAACTCACTCTCTCAACTCACCTACCTCTCGCTTCTGGGCAACGCTCTCTCCGGTTCGTTACCCTCTTTGGCGAACCTCACCATGCTCGTAACCGTTTACCTCGACGGCAACAACTTCACCTCCGTCACTGACGGTTGCTTCCAGGGGCTAACCAACTTGCAGAACATTAGCATGACCAACAACATCAACCTCGCACCCTGGACGTTTCCCACCGAGTTGACTCAGTCATACAACCTCGTCCAACTCGACCTCGGAAACACAAACCTCATGGGTTCCTTGCCGGATGTGTTTGGTTCCTTTGTCACTTTGCAGGGCCTTCGTCTCTCTTACAACTACCTCACCGGTGGTTTGCCAAAGTCCTTTGCAGGATCTGGGATTCAGAATTTGTGGCTCAACAATCAGAGAGATGGGTCTGGGTTTTCTGGTTCAATTGATGTGCTTTCTTCCATGACACGCTTGTCTCAGGTGTGGCTTCATAAGAACCACTTCACGGGTCCAATTCCTGATTTGTCAAATTGTACTAGTTTGTTTGATCTTCAGCTTAGGGACAATCAGTTAACCGGTGTTGTTCCATCTTCTTTGATGGGTCTCTCTAGCTTACAGAGCATTTCTTTGGACAGCAACTTGCTTCAGGGTCCTGTTCCTGTGTTTGGGAAAGGTGTGAAGTTCACTCTTGATGGGATCAATAGCTTTTGTCAATCAAGTCCTGGTGTGCCTTGTGATCCCATTGCCACTACTTTGCTTGATGTTGCTGCGGGTTTTGGGTACCCCCTTCAGTTGGCCAGTGTCTGGAAAGGGAACAATACTTGTCAAGATTGGAGCTTCATTGTGTGTGCTGAGGGAAAAATTATTACGGTGCTTTTAGCAAAGCAGAATTTGGCCGGAACCATTTCAGCTGCATTTGCCAATTTAACTGATTTGAGGAACTTGTTTCTCAATGATAATAATTTGGTCGGTTCAATACCTGGGAGCTTGACAACTTTGCCTCAACTTGAGGTTCTGGATGTGTCTAACAACAACCTATCTGGAGAGATTCCCAATTTCTCAGCTAAGGTGAAGAAGTTCTCTCGTGCCGGTAATGTTTTGCTTGGTCGTCCTGGTGATGGAGGCAGTGGAACTAGTCCACCATCGGATTCTGGTAATGCGCCGGGTGGAAGTCCATCTAAAACAGCAAAAGGTTCTTCCCTGACTCCTGCTTGGATCGCAGGTATAGCCATTATTGCTGTATTTTTCGTTGTGGTGGTGTTGTTTGTGTTTTGCAAGTGTTATGCCAAAAACGGAAGGGTTAATGATGCTGAAAATGGAGAAGGAGACGTTAAAGCTGATGTAATTAGTGTTGTCGATTCCAATGGATATGATGGAGTTCAGAGCGAGACACAAAGCCAGGGCAGCGTTGAGCGTAGTGACCTTCATGCTTTTGAGGGTGGAAATGCTACAATTTCAATCCAAGTTCTTCGGCAAGCAACGAATAATTTCAGTGAAGACAACATTGTGGGTAGGGGAGGATTTGGAGTTGTTTATAAAGGGGAATTGCATGATGGAACTAAAATTGCTGTGAAGAGGATGGAGTCTGGTCCAATTGGAAGTAAAGGAATGAATGAGTTCCAAGCAGAGATTGCAGTTCTCACTAAAGTTAGGCATAGGCATTTGGTTGCTCTTTTAGGATATTGCATGAATGGCAATGAAAGGCTTTTGGTGTACGAGTATATGCCTCAAGGGACATTAACAGAACATCTGTTTGATTGGCGTGAAAATGGCTGTGCTCCTTTGACTTGGAAACAAAGGATCGCAATAGCTTTGGATGTAGCTCGGGGAGTTGAATACTTGCACAGCTTAGCTCAGCAAAGCTTCATTCACAGAGACTTGAAACCCTCAAACATACTATTGGCTGATGACATGAGAGCTAAGGTTGCAGACTTTGGGTTGGTTAAAAATGCACCAGATGGGAAATACTCTGTCGAGACGCGGTTGGCTGGAACATTTGGATATCTTGCACCTGAATATGCAGCTACTGGAAGAGTGACAACAAAAGTAGATGTTTATGCATTTGGAGTAGTTTTGATGGAACTGATTACCGGTAGAAGGGCATTGGATAATACTCTACCTAATGAAAGGTCTCACTTAGTTTCATGGTTCCGTGGGGTACGAACTAACATGGAGAACATCCCAAAGGCAATTGATCAAATTCTCAACCCTGATGAGGAAAACATGGAGAGCATATATAAAGTGGCTGAGCTGGCAGGCCATTGCACTGCTCGTAAACCATACCGAAGGCCAGATATGTGGCATGCAGTGCATGTCTTGGTTCCTCTGGTAGAACAATGGAAGCCTACAAGCCATGAAGAAGAAGAAGGTTCTGGCATTGACCTTCACATGAGCCTTCCTCGAGCTCTTCAAAGATGGCAAGCCAATGAAGGAACTTCCACAATGTTTAATGACATGTCCATCTCACAAACCCAATCAAGCATTCCTGCAAAGCCTTCAGGATGGAGAATGTTACGGTATTTTTTTTGGCAATGGTTCTTTTTCATGAGGCTCCTGCCTTTGGAAGTGGTGCACTCCATTTGTGCTATCATTCCCCCATCTGGCCAAAGAGATGAAGATGGCCTGGTGTGGAGTAATAATTTTGGCAATAGGAACATGATCAAATTAGCTTATAAAAGACTAATGAATTTTGAAGCTGTGGTTGTTAATCCTTTGTGGAACCTAATCTGGAATTGA 2979 0.4522 MADSKLKSKSLVSLSKLFLCFSLLSTAAVADDSAFMSKLAKAIGPSGWSATTAFCNWSGVKCDSSNRVITINLSSKKLSGTLPPDLNSLSQLTYLSLLGNALSGSLPSLANLTMLVTVYLDGNNFTSVTDGCFQGLTNLQNISMTNNINLAPWTFPTELTQSYNLVQLDLGNTNLMGSLPDVFGSFVTLQGLRLSYNYLTGGLPKSFAGSGIQNLWLNNQRDGSGFSGSIDVLSSMTRLSQVWLHKNHFTGPIPDLSNCTSLFDLQLRDNQLTGVVPSSLMGLSSLQSISLDSNLLQGPVPVFGKGVKFTLDGINSFCQSSPGVPCDPIATTLLDVAAGFGYPLQLASVWKGNNTCQDWSFIVCAEGKIITVLLAKQNLAGTISAAFANLTDLRNLFLNDNNLVGSIPGSLTTLPQLEVLDVSNNNLSGEIPNFSAKVKKFSRAGNVLLGRPGDGGSGTSPPSDSGNAPGGSPSKTAKGSSLTPAWIAGIAIIAVFFVVVVLFVFCKCYAKNGRVNDAENGEGDVKADVISVVDSNGYDGVQSETQSQGSVERSDLHAFEGGNATISIQVLRQATNNFSEDNIVGRGGFGVVYKGELHDGTKIAVKRMESGPIGSKGMNEFQAEIAVLTKVRHRHLVALLGYCMNGNERLLVYEYMPQGTLTEHLFDWRENGCAPLTWKQRIAIALDVARGVEYLHSLAQQSFIHRDLKPSNILLADDMRAKVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKVDVYAFGVVLMELITGRRALDNTLPNERSHLVSWFRGVRTNMENIPKAIDQILNPDEENMESIYKVAELAGHCTARKPYRRPDMWHAVHVLVPLVEQWKPTSHEEEEGSGIDLHMSLPRALQRWQANEGTSTMFNDMSISQTQSSIPAKPSGWRMLRYFFWQWFFFMRLLPLEVVHSICAIIPPSGQRDEDGLVWSNNFGNRNMIKLAYKRLMNFEAVVVNPLWNLIWN 992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2923g00002 992 Gene3D Phosphorylase Kinase; domain 1 539 655 - -
Gabi2923g00002 992 MobiDBLite consensus disorder prediction 458 478 - -
Gabi2923g00002 992 SMART serkin_6 578 855 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2923g00002 992 FunFam Leucine-rich repeat receptor-like kinase 328 452 - -
Gabi2923g00002 992 Pfam Leucine rich repeat N-terminal domain 45 63 IPR013210 -
Gabi2923g00002 992 Pfam Leucine rich repeat N-terminal domain 331 364 IPR013210 -
Gabi2923g00002 992 Gene3D Ribonuclease Inhibitor 30 321 IPR032675 -
Gabi2923g00002 992 ProSiteProfiles Leucine-rich repeat profile. 416 438 IPR001611 GO:0005515
Gabi2923g00002 992 Pfam Protein kinase domain 579 852 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2923g00002 992 FunFam receptor protein kinase TMK1 540 655 - -
Gabi2923g00002 992 CDD STKc_IRAK 584 857 - -
Gabi2923g00002 992 Gene3D Ribonuclease Inhibitor 329 447 IPR032675 -
Gabi2923g00002 992 FunFam receptor protein kinase TMK1 656 873 - -
Gabi2923g00002 992 SMART LRR_typ_2 112 135 IPR003591 -
Gabi2923g00002 992 SMART LRR_typ_2 414 437 IPR003591 -
Gabi2923g00002 992 ProSitePatterns Serine/Threonine protein kinases active-site signature. 703 715 IPR008271 GO:0004672|GO:0006468
Gabi2923g00002 992 SUPERFAMILY Protein kinase-like (PK-like) 556 854 IPR011009 -
Gabi2923g00002 992 ProSitePatterns Protein kinases ATP-binding region signature. 584 606 IPR017441 GO:0005524
Gabi2923g00002 992 Gene3D Transferase(Phosphotransferase) domain 1 656 877 - -
Gabi2923g00002 992 FunFam Receptor-like kinase TMK4 30 323 - -
Gabi2923g00002 992 SUPERFAMILY L domain-like 52 435 - -
Gabi2923g00002 992 ProSiteProfiles Protein kinase domain profile. 578 855 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2923g00002 992 PANTHER OSJNBA0070M12.3 PROTEIN 17 908 - -
Gabi2923g00002 992 MobiDBLite consensus disorder prediction 451 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2923g00002 Gabi-Chr2923 24391 30277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2923g00002 68 854 Receptor kinase-like Gene Family AT5G07280 33.006 4.18e-94 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Gabi2923g00002 Pkinase 5.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2923g00002 K00924 - gmx:100781851 1354.35