Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2921g00001 ATGTGGCCTAGTTCCACTAGGTCAATCAACTACGGCCTGTCACCGGATATGGGCATGGTGGGTCTCCGTGACTTGTTCGTGGTGACACCTGCTTCATCTTTCCACCACCACAATCACCACCACCATGAGGCTGTGATGTCGGATCTTCACTTCATGAACGGTGGTTCCAACCCTGCCACTGCACTTGGTGTTGGTGTTATCCCTGTCCTCACTTCAACTCCATGCGTTGCCCCTCCTAACATAAACATGGACGACGAGAACCTCATAGGGAATCGTGGCCGTGGAGGGGGAATTCAGTTTTGGCAGGACCATGAATCTCAACAACAACAACAACATAATCACTATTTAAAGAAGCATGCTCTTCTTGAGCACAATAATAGCGATGACAATTTAGTACGAAGTGGTAGTGGTGGTGGTGGAATAACAACTTGCCAAGACTGTGGAAACCAGGCGAAGAAAGGTTGTAGTCATAGAAGGTGCAGGACATGCTGCAAGAGTCGTGGTTTTGATTGCCCTACTCACGTGAAGAGCACGTGGGTTCCGGTGGCACGGCGGCGGGAACGACAGCTCATGGCGGAGGCTACTACTGCTGCTGCCGCGGGGTCTAGTGGTTCAACTTCTGGCACCAAGAAACCTAGGCTCATTGCTTCAAACACCACAACAACATCTCATACTTCGACTTCTAATAACACTCCCCCTAGGAGCTTTGACACTAGTTCTAGCCATCAAGATGCGAGTTTCAAAGAGTCATTGCCTGGTCAAGTGCGTGCACCCGCAGTGTTCAATTGTGTCAGAGTAACGGCAGTGGATGATGGTGAAGATGAGTACGCATATCAGGCTACTGTGAAGATTGGTGGCCATGTGTTTAAAGGGTTTCTTTATGATCAAGGGGTTCAAGATAGAGATGCTTATCCTAATCTTTCTGAACTGCATTTGGGTGGTGGTGGAAATGTTGGAAGTGGTAGAAATGGAATTTCATCTTCATCTCCAATGATTGATCCTTCTGATGTTTATGCAGCTTCGGGTGGAGGGTTACTCGGAGGTTCATCTACCTTTGGTAATCAAATAAATTAA 1074 0.4777 MWPSSTRSINYGLSPDMGMVGLRDLFVVTPASSFHHHNHHHHEAVMSDLHFMNGGSNPATALGVGVIPVLTSTPCVAPPNINMDDENLIGNRGRGGGIQFWQDHESQQQQQHNHYLKKHALLEHNNSDDNLVRSGSGGGGITTCQDCGNQAKKGCSHRRCRTCCKSRGFDCPTHVKSTWVPVARRRERQLMAEATTAAAAGSSGSTSGTKKPRLIASNTTTTSHTSTSNNTPPRSFDTSSSHQDASFKESLPGQVRAPAVFNCVRVTAVDDGEDEYAYQATVKIGGHVFKGFLYDQGVQDRDAYPNLSELHLGGGGNVGSGRNGISSSSPMIDPSDVYAASGGGLLGGSSTFGNQIN 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2921g00001 357 MobiDBLite consensus disorder prediction 196 248 - -
Gabi2921g00001 357 NCBIfam LRP1 C-terminal domain 251 298 IPR006511 -
Gabi2921g00001 357 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 67 341 IPR007818 GO:0003700|GO:0006355
Gabi2921g00001 357 MobiDBLite consensus disorder prediction 193 251 - -
Gabi2921g00001 357 Pfam Domain of unknown function (DUF702) 142 299 - -
Gabi2921g00001 357 NCBIfam putative zinc finger domain, LRP1 type 143 185 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2921g00001 Gabi-Chr2921 11554 12879 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2921g00001 2 337 C2H2 Transcription Factor Family AT5G12330 51.873 3.91e-96 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Gabi2921g00001 DUF702 4.6e-62 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2921g00001 - - jre:108994634 438.728