Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2916g00001 ATGGGAGATAGCACTAGGAATTATTTTACTTGTCAAGAAGAGTCTTTGCATTTTGACTTGGCTACAATTGAAGCTGCAACAAATAGGTTCTCGAATGAGAAGAAGATAGGCCAAGGTGGATTTGGTGTGGTTTATAAGGGTACCCTTCCTAATGGACAAGAGATAGCTGCAAAGAGGCTATCCAGAAGCTCCTTGCAGGGTGACATCGAATTCAAGAACGAGGCTGCACTTGTTGCACTTCAACATAGAAATTTAGTTAGGCTTTTAGGGTTTTGCTTGGAGGGAGCAAAGAGGATATTTGGTTACGAATTCATCCCCAATTCAAGCCTTGACCGCTTTCTATGTGATCATGAGAACCAAGCAGAGCTTGATTGGGCAACACGTTACCAAATTATAGATGGGATTGCTGGAGGAGTTAAATACATGCATGAAGATTCTAATCTTAGAATAATACATCGCGATCTCAAGGCTAGTAATGTCCTATTAGATGACGAAATGAATCCAAAGATTTCAGATTTTGGCATGGCAAAGATTTTCCATGGAGACCAAAGTCAAGTTGACTCTACAACAGAAAGGATAGTTGGAACTTATGGTTACATGGCTCCTGAATATGCAATGTATGGAGAATTATCTGTGAAATCCGATGTGTTCAGCTTCGGAGTCTTGCTTTTGGAGATCATTAGTGGCACGAAGAACACGAGTTATTGTCAATCACAAGATGATGATGACCTTTTGAGCTATGCTTGGAAAAATTGGAAGAATCAAACACCTTTCCTTATTTTGGACCCAAAACTGGGAGATTTATATTCTAGAAATGAAGTTCAGAGATGCATCCATATTGCTTTATTATGCGTTCAAGAAAATCCAGCTGACAGGCCTTCAATGGCGAGTGTAGTACTTTGGTTGAACAGTTATTCAGTAACCTTAGCATTACCTCGACAGCCAGCATCTGTTTTTCTTGGAAGCCCTTCACCAGACAGATTAAGACACCAGCTTTATTCTGATCTGTCTACCAGCTCTATCTCTATGAATAATTATTTAATTACTGAAATATATCCCCGATAA 1065 0.3953 MGDSTRNYFTCQEESLHFDLATIEAATNRFSNEKKIGQGGFGVVYKGTLPNGQEIAAKRLSRSSLQGDIEFKNEAALVALQHRNLVRLLGFCLEGAKRIFGYEFIPNSSLDRFLCDHENQAELDWATRYQIIDGIAGGVKYMHEDSNLRIIHRDLKASNVLLDDEMNPKISDFGMAKIFHGDQSQVDSTTERIVGTYGYMAPEYAMYGELSVKSDVFSFGVLLLEIISGTKNTSYCQSQDDDDLLSYAWKNWKNQTPFLILDPKLGDLYSRNEVQRCIHIALLCVQENPADRPSMASVVLWLNSYSVTLALPRQPASVFLGSPSPDRLRHQLYSDLSTSSISMNNYLITEIYPR 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2916g00001 354 FunFam cysteine-rich receptor-like protein kinase 10 105 309 - -
Gabi2916g00001 354 Pfam Protein tyrosine and serine/threonine kinase 32 299 IPR001245 GO:0004672|GO:0006468
Gabi2916g00001 354 SUPERFAMILY Protein kinase-like (PK-like) 15 341 IPR011009 -
Gabi2916g00001 354 ProSiteProfiles Protein kinase domain profile. 30 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2916g00001 354 SMART serkin_6 30 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2916g00001 354 Gene3D Phosphorylase Kinase; domain 1 2 104 - -
Gabi2916g00001 354 ProSitePatterns Serine/Threonine protein kinases active-site signature. 150 162 IPR008271 GO:0004672|GO:0006468
Gabi2916g00001 354 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 4 104 - -
Gabi2916g00001 354 Gene3D Transferase(Phosphotransferase) domain 1 105 310 - -
Gabi2916g00001 354 ProSitePatterns Protein kinases ATP-binding region signature. 36 58 IPR017441 GO:0005524
Gabi2916g00001 354 CDD STKc_IRAK 36 299 - -
Gabi2916g00001 354 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 13 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2916g00001 Gabi-Chr2916 590 2979 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2916g00001 15 354 Receptor kinase-like Gene Family AT4G11530 56.522 1.53e-131 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi2916g00001 PK_Tyr_Ser-Thr 1.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2916g00001 - - ccaj:109806163 522.316