Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2913g00007 ATGGGGAGGGGAAAGATTGAAATCAAAAGGATTGAGAACACAACTAATCGCCAAGTCACATTCTGCAAGCGAAGAAATGGGCTTCTCAAGAAAGCTTATGAGCTTTCTGTGCTGTGTGATGCAGAAGTGGCACTCATTGTCTTCTCAAGCCGTGGCAGACTCTATGAGTATTCAAACAACAACATAAGGTCAACTATTGAGAGGTACAAAAAGGCATGTTCAGATCATTCAAGTACGAGCACTACCACTGAAATTAATGCTCAGTATTATCAACAAGAATCTGCAAAGCTGCGACAGCAAATACAGATGCTGCAAAATTCTAACAGGCACCTGATGGGCGATGCCTTAAGCACACTGACTGTGAAGGAACTTAAGCAGTTGGAGAATAGACTTGAAAGAGGAATAACTAGAATCAGATCTAAGAAAGAAATTGAACTGGAAAATGAAAATCTTTGCCTTCGGACTAAGATAACTGATGTTGAGAGGATTCAGCAAGTAAACATGGTTTCTGGACAAGAACTGAATGCCATCCAGGCATTAGCTTCCCGTAATTTCTTCAATCCAAACATGATGGAAGGTGGAACTGCCTACCCTCAGCCAGATAAGAAGATTCTCCATCTTGGGTAA 627 0.4131 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNNIRSTIERYKKACSDHSSTSTTTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDALSTLTVKELKQLENRLERGITRIRSKKEIELENENLCLRTKITDVERIQQVNMVSGQELNAIQALASRNFFNPNMMEGGTAYPQPDKKILHLG 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2913g00007 208 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Gabi2913g00007 208 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gabi2913g00007 208 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gabi2913g00007 208 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gabi2913g00007 208 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gabi2913g00007 208 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gabi2913g00007 208 Coils Coil 124 144 - -
Gabi2913g00007 208 ProSiteProfiles K-box domain profile. 87 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi2913g00007 208 Coils Coil 87 107 - -
Gabi2913g00007 208 FunFam agamous-like MADS-box protein AGL11 13 96 - -
Gabi2913g00007 208 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Gabi2913g00007 208 Pfam K-box region 84 161 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi2913g00007 208 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gabi2913g00007 208 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 164 - -
Gabi2913g00007 208 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gabi2913g00007 208 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2913g00007 Gabi-Chr2913 268912 274696 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2913g00007 1 208 MADS-box Gene Family AT4G09960 72.174 9.87e-113 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gabi2913g00007 K-box 2.5e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2913g00007 K09264 - gmx:100301905 387.882