Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2913g00001 ATGGCTTCCGAAGGCTTCACCGACAAGAACACTCTGTTCAGGAAACTCAAGGCGAAGTCCGAAAATAAGATGTGTTTCGATTGCAATGCTAAGAACCCAACTTGGGCTTCGGTTACGTATGGGATCTTCCTCTGCATCGATTGCTCCGCCGTTCATCGTAGTCTTGGCGTGCACATCAGCTTTGTGAGATCTACGAACTTAGACTCATGGAGTCCCGAGCAATTAAGAATGATGAGCTTTGGAGGAAACAATCGTGCACAAGTTTTCTTCAAGCAACATGGTTGGTCAGATGGTGGTAAAACAGAGGCAAAGTATACATCCAGAGCTGCTGAGTTGTACAGGCAAATTCTTTCAAAGGAAGTAGCTAAAAGTATGGCTGAAGAGGCAAGCTTGCCATCATCACCTTTCACTCCCCAGTCTGCCCAAGGAGCTATTGGACTTCCTGAAGTCAGGACCAATGAAGTAACAAAAGAAAACACACTGGAGAAGCCAGAAAAGCCTGAGAGCACTTCTTCACCTAGAGCTTCATATACAGTAGTTTCAAGTACGATGAAGAAGCCTATTGGTGCTAAAAAAACTGGGAAGAGTCTGGGGCTTGGTGCGCGTAAGCTCACTAGTAAGTCAGGTGAGTCTCTCTATGAGCAGAAGCCTGAAGAACCACCTGCTCCAGTTTCATCCTCAACAAAGAACAATTTGCCTGTTGGGCCATCTTTGACATCCCGGTTTGAGTATGTAGAAAATGTCCAATCATCTGAGTCGAATTCTGGAGGTTCACATATACTTAATCATGTGGCTCCACCAAAGTCATCAAGCTTCTTTGCGGACTTTGGAATGGATAATGGCTTTCCAAAGAAATCTGGGTCAAGCTCCTCAAAAGTGCAAGAATCTGATGAAGCAAGAAAAAAGTTCTCAAATGCCAAATCTATTTCTTCATCTCAATTTTTTGGAGATCAGAACAAAGCTGCAAATGCGGATGCTCAAGTTACTTTGTCCAAGTTTTCAGGTTCAACTGCCATCTCCAGTGCTGATCTTTTTGGTGACTCGAGAGATAACTCCTCCATTGATGTTACTGCTAGCGACCTCCTCAATCGATTATCTTTCCAGGCACAGCAGGATATCTCTTCACTTAAGAACATTGCTGGAGAAACAGGGAAGAAGCTCAGCTCATTGGCCTCCACCTTGATGACAGATCTTCAGGACCGAATCCTCTAA 1212 0.4439 MASEGFTDKNTLFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSPEQLRMMSFGGNNRAQVFFKQHGWSDGGKTEAKYTSRAAELYRQILSKEVAKSMAEEASLPSSPFTPQSAQGAIGLPEVRTNEVTKENTLEKPEKPESTSSPRASYTVVSSTMKKPIGAKKTGKSLGLGARKLTSKSGESLYEQKPEEPPAPVSSSTKNNLPVGPSLTSRFEYVENVQSSESNSGGSHILNHVAPPKSSSFFADFGMDNGFPKKSGSSSSKVQESDEARKKFSNAKSISSSQFFGDQNKAANADAQVTLSKFSGSTAISSADLFGDSRDNSSIDVTASDLLNRLSFQAQQDISSLKNIAGETGKKLSSLASTLMTDLQDRIL 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2913g00001 403 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 128 IPR001164 GO:0005096
Gabi2913g00001 403 Gene3D Arf GTPase activating protein 2 135 IPR038508 -
Gabi2913g00001 403 SMART arf_gap_3 10 126 IPR001164 GO:0005096
Gabi2913g00001 403 SUPERFAMILY ArfGap/RecO-like zinc finger 11 125 IPR037278 -
Gabi2913g00001 403 CDD ArfGap_ArfGap2_3_like 8 123 - -
Gabi2913g00001 403 MobiDBLite consensus disorder prediction 221 260 - -
Gabi2913g00001 403 FunFam ADP-ribosylation factor GTPase-activating protein AGD10 1 137 - -
Gabi2913g00001 403 Pfam Putative GTPase activating protein for Arf 12 114 IPR001164 GO:0005096
Gabi2913g00001 403 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 6 403 - -
Gabi2913g00001 403 MobiDBLite consensus disorder prediction 129 264 - -
Gabi2913g00001 403 MobiDBLite consensus disorder prediction 155 169 - -
Gabi2913g00001 403 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Gabi2913g00001 403 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Gabi2913g00001 403 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Gabi2913g00001 403 MobiDBLite consensus disorder prediction 284 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2913g00001 Gabi-Chr2913 26044 35284 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2913g00001 13 91 C2H2 Transcription Factor Family AT4G21160 46.250 9.24e-20 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2913g00001 K12493 K11855 gmx:100785169 670.233