Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi290g00007 ATGGCTTTCTTCCCAGCAAATTTCATGCTACAAACCCCTCATCAAGATGACCAGCAAACTCCAGCTTCACTCAACTCAATCATAACCTCATGTGCACCTCAAGAGTACCATGGAGGAGCATCCTTTCTAGGCAAGAGATCTATGTCATTTTCAGGGCTTGAGCTTGGAGAAGAAGCTAATGCTGAGGAAGAATTGTCTGATGATGGATCACAGATTGGGGAGAAGAAGAGGAGGCTAAACATGGAACAAGTGAAGACACTTGAGAAGAGCTTTGAATTGGGAAACAAGCTTGAACCAGAAAGGAAAATGCAGCTGGCAAGGGCTCTTGGGCTGCAACCTAGACAGATTGCTATATGGTTCCAAAACAGAAGGGCTAGGTGGAAGACTAAACAGTTGGAGAAAGACTATGATCTTCTCAAAAGACAATATGATGCTGTCAAGGCAGATAATGATGCACTTCAATCTCAGAACCAAAATCTTCAGACAGAGATATTGGCACTGAAAAGCAGAGAACCAACTGAATCTATCAACCTCAATAAGGAAACAGAGGGATCAAGCAGCAATAGAAGTGAAAACAGCTCAGAACTTAAGTTGGATATCTCAAGAACACCAGCTATTGATAGTCCTCTATCAGCTCAACACACCAGCAGAACCCTCTTTCCATCTTCTGCTAGACCAACAGGAGTGGCTCAGCTTTTCCAAACTAGTACTACTTCAAGGCCAGATCTTCAGTGCCAAAAGATTGATCACATGGTCAAAGAAGAGAGCTTAAGCAGCATGTTTTGTGGCATTGATGAGCAATCTGGCCTCTGGCCATGGTTGGAGCCACAACATTTCAATTGA 843 0.4342 MAFFPANFMLQTPHQDDQQTPASLNSIITSCAPQEYHGGASFLGKRSMSFSGLELGEEANAEEELSDDGSQIGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQYDAVKADNDALQSQNQNLQTEILALKSREPTESINLNKETEGSSSNRSENSSELKLDISRTPAIDSPLSAQHTSRTLFPSSARPTGVAQLFQTSTTSRPDLQCQKIDHMVKEESLSSMFCGIDEQSGLWPWLEPQHFN 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi290g00007 280 MobiDBLite consensus disorder prediction 167 196 - -
Gabi290g00007 280 SUPERFAMILY Homeodomain-like 69 132 IPR009057 -
Gabi290g00007 280 Coils Coil 122 170 - -
Gabi290g00007 280 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 54 210 IPR045224 GO:0003700
Gabi290g00007 280 CDD homeodomain 75 131 IPR001356 GO:0003677
Gabi290g00007 280 MobiDBLite consensus disorder prediction 58 77 - -
Gabi290g00007 280 SMART HOX_1 73 134 IPR001356 GO:0003677
Gabi290g00007 280 FunFam Homeobox-leucine zipper protein ATHB-13 67 134 - -
Gabi290g00007 280 ProSitePatterns 'Homeobox' domain signature. 105 128 IPR017970 GO:0000981|GO:0006355
Gabi290g00007 280 Pfam Homeodomain 75 128 IPR001356 GO:0003677
Gabi290g00007 280 ProSiteProfiles 'Homeobox' domain profile. 70 130 IPR001356 GO:0003677
Gabi290g00007 280 Pfam Homeobox associated leucine zipper 130 170 IPR003106 GO:0006355|GO:0043565
Gabi290g00007 280 PRINTS Lambda-repressor HTH signature 101 110 IPR000047 GO:0003677
Gabi290g00007 280 PRINTS Lambda-repressor HTH signature 110 126 IPR000047 GO:0003677
Gabi290g00007 280 Gene3D - 67 136 - -
Gabi290g00007 280 MobiDBLite consensus disorder prediction 178 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi290g00007 Gabi-Chr290 140253 142325 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi290g00007 1 280 Homeobox Transcription Factor Family AT1G69780 61.409 2.05e-115 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gabi290g00007 Homeodomain 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi290g00007 K09338 - gmx:100801479 494.582