Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi290g00006 ATGTCCTTTTCACTGGATATGGCTTTCTTCCCAGCAAATTTCATGCTACAAACCCCTCATCAAGATGACCAGCAAACTCCAGCTTCACTCAACTCAATCATAACCTCATGTGCACCTCAAGAGTACCATGGAGGAGCATCCTTTCTAGGCAAGAGATCTATGTCATTTTCAGGGCTTGAGCTTGGAGAAGAAGCTAATGCTGAGGAAGAATTGTCTGATGATGGATCACAGATTGGGGAGAAGAAGAGGAGGCTAAACATGGAACAAGTGAAGACACTTGAGAAGAGCTTTGAATTGGGAAACAAGCTTGAACCAGAAAGGAAAATGCAGCTGGCAAGGGCTCTTGGGCTGCAACCTAGACAGATTGCTATATGGTTCCAAAACAGAAGGGCTAGGTGGAAGACTAAACAGTTGGAGAAAGACTATGATCTTCTCAAAAGACAATATGATGCTGTCAAGGCAGATAATGATGCACTTCAATCTCAGAACCAAAATCTTCAGACAGAGATATTGGCACTGAAAAGCAGAGAACCAACTGAATCTATCAACCTCAATAAGGAAACAGAGGGATCAAGCAGCAATAGAAGTGAAAACAGCTCAGAACTTAAGTTGGATATCTCAAGAACACCAGCTATTGATAGTCCTCTATCAGCTCAACACACCAGCAGAACCCTCTTTCCATCTTCTGCTAGACCAACAGGAGTGGCTCAGCTTTTCCAAACTAGTACTACTTCAAGGCCAGATCTTCAGTGCCAAAAGATTGATCACATGGTCAAAGAAGAGAGCTTAAGCAGCATGTTTTGTGGCATTGATGAGCAATCTGGCCTCTGGCCATGGTTGGAGCCACAACATTTCAATTGA 861 0.4332 MSFSLDMAFFPANFMLQTPHQDDQQTPASLNSIITSCAPQEYHGGASFLGKRSMSFSGLELGEEANAEEELSDDGSQIGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQYDAVKADNDALQSQNQNLQTEILALKSREPTESINLNKETEGSSSNRSENSSELKLDISRTPAIDSPLSAQHTSRTLFPSSARPTGVAQLFQTSTTSRPDLQCQKIDHMVKEESLSSMFCGIDEQSGLWPWLEPQHFN 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi290g00006 286 SMART HOX_1 79 140 IPR001356 GO:0003677
Gabi290g00006 286 SUPERFAMILY Homeodomain-like 75 138 IPR009057 -
Gabi290g00006 286 FunFam Homeobox-leucine zipper protein ATHB-13 73 140 - -
Gabi290g00006 286 Pfam Homeodomain 81 134 IPR001356 GO:0003677
Gabi290g00006 286 ProSiteProfiles 'Homeobox' domain profile. 76 136 IPR001356 GO:0003677
Gabi290g00006 286 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 60 216 IPR045224 GO:0003700
Gabi290g00006 286 MobiDBLite consensus disorder prediction 184 202 - -
Gabi290g00006 286 ProSitePatterns 'Homeobox' domain signature. 111 134 IPR017970 GO:0000981|GO:0006355
Gabi290g00006 286 PRINTS Lambda-repressor HTH signature 116 132 IPR000047 GO:0003677
Gabi290g00006 286 PRINTS Lambda-repressor HTH signature 107 116 IPR000047 GO:0003677
Gabi290g00006 286 Pfam Homeobox associated leucine zipper 136 176 IPR003106 GO:0006355|GO:0043565
Gabi290g00006 286 MobiDBLite consensus disorder prediction 173 202 - -
Gabi290g00006 286 Coils Coil 128 176 - -
Gabi290g00006 286 CDD homeodomain 81 137 IPR001356 GO:0003677
Gabi290g00006 286 Gene3D - 73 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi290g00006 Gabi-Chr290 136251 142325 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi290g00006 1 286 Homeobox Transcription Factor Family AT1G69780 60.855 7.90e-116 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gabi290g00006 Homeodomain 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi290g00006 K09338 - gmx:100801479 494.582