Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2909g00042 ATGTTTCCCACAGCTTTGTCCAATTCGAATTATTCTTTGTCCGAGGATGCAAGTGTTTCTTCTGGTACAAGAGTTCATGAAAACTTGGTTGGACTAAATCACGTGGTCTCAAACATTTCTCCTCAGCAGCCTCTAAAGATCAAGAAAAAAAGAAGCCTCCCTGGGAACCCAGACCCTGATGCTGAAGTGATTGTCTTATCACCGAAAACCCTTCTTGCTACGAATAGATTTGTTTGCGAGATTTGTAAGAAGGGTTTCCAGAGAGATCAGAACCTCCAGCTTCATAGGAGGGGCCATAACCTCCCCTGGAAGCTGAAGCAAAGGAATAGCAAAGAGGTTAAAAAGAAAGCCTACGTTTGCCCTGAACCTTCATGCGTTCACCACAACCCGTCAAGGGCTCTTGGGGATCTTACAGGAATTAAGAAACACTACTGCAGAAAGCATGGAGAGAAGAAGTGGAAATGTGAAAAGTGCTCCAAGATATATGCGGTTCAGTCAGATTGGAAGGCTCACTCTAAAACCTGTGGCACTAGAGAATATAGATGTGATTGTGGAACCCTTTTTTCCAGGAAGGACAGCTTCATAACTCATAGGGCATTCTGTGATGCATTGGCTGAAGAAAGTGCAAGAGTATCAGCAAACCAATTACCCACCACAACAAACCCATCATTAGGTCAGTCTCTCTTTCTCTTCCAAAACCATCAGTTCAACAATTTCATTCCCTGGGACTCATCTCAAGAAAACCCTAACCCTAGCAACAATATTGATGCTACCTTCCAATATATCAAGCCTGAAGCTCAAAATCTCCATAACCCCACCCTCTCTTCTTTACCCTCACTTCTTCAACAACCTCATAGCCATGAGCAATATAAGACGTCACCCTTCGGGAACCTTCATGTCCCCACGCAATTACCATCATCCAACGCCACCACGTCAGCATACATGTCAGCCACTGCATTGCTTCAAAAGGCTGCAACCGTTGGTACCGCTGCTATCAATGGGTCAATGGGTCACGTGACTCACCACCTCGGCATGGGCGAGTTTGGAACACTGAGTCAACTCGACTCGGTGGTCCCCGATTACATGAGCATGCAGAGAGGGTTCCCCAAGAACGACCGTCTCACCAGGGACTTTCTGGGAGTCAAACGGGATGCCAACGAAGGAGTTGACGGAGGTAAAGGCTGCGTCGTTGACGTTAGCCTGAATGTGAAGGATGCGCTAACCTTCGCGGGAGGCGTAGAGTACCACCACCAACACGCGCCATTGAAGCCTCTTCAAGGTTTTGGATTACTTGGGACAACCACTGCCCCAGAAACGTGGGGGAATTGTTGA 1332 0.4715 MFPTALSNSNYSLSEDASVSSGTRVHENLVGLNHVVSNISPQQPLKIKKKRSLPGNPDPDAEVIVLSPKTLLATNRFVCEICKKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVKKKAYVCPEPSCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCEKCSKIYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARVSANQLPTTTNPSLGQSLFLFQNHQFNNFIPWDSSQENPNPSNNIDATFQYIKPEAQNLHNPTLSSLPSLLQQPHSHEQYKTSPFGNLHVPTQLPSSNATTSAYMSATALLQKAATVGTAAINGSMGHVTHHLGMGEFGTLSQLDSVVPDYMSMQRGFPKNDRLTRDFLGVKRDANEGVDGGKGCVVDVSLNVKDALTFAGGVEYHHQHAPLKPLQGFGLLGTTTAPETWGNC 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2909g00042 443 ProSitePatterns Zinc finger C2H2 type domain signature. 79 99 IPR013087 -
Gabi2909g00042 443 Gene3D Classic Zinc Finger 56 125 - -
Gabi2909g00042 443 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 35 387 IPR031140 -
Gabi2909g00042 443 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 99 IPR013087 -
Gabi2909g00042 443 FunFam protein indeterminate-domain 5, chloroplastic-like 131 210 - -
Gabi2909g00042 443 SMART c2h2final6 118 148 IPR013087 -
Gabi2909g00042 443 SMART c2h2final6 77 99 IPR013087 -
Gabi2909g00042 443 SMART c2h2final6 153 173 IPR013087 -
Gabi2909g00042 443 SUPERFAMILY beta-beta-alpha zinc fingers 76 173 IPR036236 -
Gabi2909g00042 443 Gene3D Classic Zinc Finger 146 211 - -
Gabi2909g00042 443 FunFam protein indeterminate-domain 12-like 56 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2909g00042 Gabi-Chr2909 410222 414877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2909g00042 16 432 IDZ Gene Family AT4G02670 48.539 2.01e-122 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi2909g00042 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2909g00042 K25870 - gmx:100788975 627.091