Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gabi2909g00040 | ATGTCGAGCAGCCAAAATCAGAAATATGATAGCAGTTCATTTCTCATTGACATCAGTAGCGCTCTCACCAGAGTCACTGCCAATTACACTATCAACAATGCCAAAAAAAGGTGGCGTTTTGCTTATACAGCAATTTATTCTAGAAGGGTCATGCTTTCTCTGGCCAAAGAGGTCATATCCAAAAGAAATCTCCATCACTACACTAAACACTTCCAAACCCAGTCATCCAGCTCCAGCAGCACTCTTGATATATTTGAGCCCCTAGTTACCCCACATGTGAGCAATGAAACCAACCGCTATTCTTTGCTCCCTGATGTTGATAAAGCCAGACTTGCTAATATGGTCAAGGACAAAAACTTGACAGCCCTTGCTGAATTCGAAGGAGTTGAAGGTGTTGCAAATGTTCTTGGTTCCATTCCAGAAAAGGGAATCCTTGGCAATGATGATGACATTGCCAAACGGCGCGAATTGTTTGGTTCAAACACTTACCAAAGGCCACCACCAAAAGTCTTCCTACACTTTGTGCTGGAAGCTTTCAATGACACCACAATTATCATTCTTCTTGTCTGTGCTGGCCTTTCCCTTGGTTTTGGCATAAAAGAACATGGACCAGGGGAAGGCTGGTATGAAGGTGGGAGCATATTTGTAGCAGTGTTTCTTGTGATTGTTGTCAGTGCACTCAGCAACTTCAGACAAGAGAGACAATTTGACAAATTATCCAAGATAAGTAACAACATCAAAGTTGAAGTTGTGAGAAATGGAAGGCCACAACAGATATCCATCTTTGATGTTCTTGTGGGAGATATTGTATCCCTTAAGATTGGTGACCAAATTCCTGCTGATGGAGTGTTCTTAGCTGGCCATTCTTTGCAAGTGGATGAATCAAGCATGACAGGTGAGAGTGACCATGTAGAAATTGAGCCTTTAAAATGCCCCTTCTTATTGTCTGGAGCAAAGGTTGTGGATGGCTATGCTCAAATGCTTGTGACATCTGTGGGAATCAACACAGCATGGGGTCAAATGATGAGCTCAATATCCCGAGACACCAATGAAAGAACACCATTACAAGCTCGCCTTGACAAGTTAACTTCTTCTATTGGAAAGGTAGGCCTTTCAGTCGCTTTTCTTGTTCTCCTAGTGTTGTTGATTCGGTATTTCACTGGAAACACACAAGATCAGAATGGGATTAAGGAGTTCAGGCGGGGTAGAACAGATATAAATGACACGTTCAATGCTGTTGTGAGTATTGTTGCAGCTGCAGTCACTATTGTGGTTGTGGCCATCCCTGAGGGTCTACCATTGGCTGTCACTCTCACATTAGCTTATTCCATGAAAAGAATGATAGCAGACCAAGCAATGGTGAGGAAACTTTCTGCTTGTGAAACTATGGGGTCAGCAACAGTTATCTGCACAGATAAAACTGGGACCTTAACGCTGAATCAGATGAGAGTGAGCAAGTTTTGGCTAGGCCTAGAAAATGTTATTGAAAACTTTTCTAATGCAATGGCCCCAAATGTTCTCGAGTTATTCCACCAAGGAGTAGGCCTCAATACAACTGGCACTGTCTATAGCCCTTCATCAGAATCTGAACCTGAAATTTCAGGTAGCCCAACGGAGAAAGCTATACTCTTATGGGCAGTGTCAGATTTAGGTATGGACATGGATGAATTGAAGAAGAAACACAAAGTTCTCCATGTTGAAACATTTAACTCACAGAAGAAACGAAGTGGCGTTGCAATAAGGAAGGAGACTAACAACACAGTTCACGTGCATTGGAAAGGAGCTGCAGAGATGATACTTGCAATGTGTTCTAATTATATTGATAGTAATGGCACAATGAAGTCCCTTGATGAAGAACGGAGTAAACTTGAGAAGATAATTCAAGGCATGGCAGCTAGCAGCCTACGATGTATTGCTTTTGCACACATGGAGATTTCAGAAGATTTTGAGAAAGCACATGAAATCCTAAGAGAAGATGGCTTGACCTTGCTAGGAATTGTTGGCCTCAAGGATCCATGCCGGCCAGATGTTAAGAAGGCGGTCGAAAATTGCAAACTTGCAGGGGTTGAAATCAAGATGATCACTGGTGATAACATATTCACAGCAAAGGCAATAGCAACAGAATGTGGAATATTAGATCTTAATAACCATGTAAATGCGGGAGAAGTGGTAGAAGGTGTGGAATTCAGAAACTACACAGAGGAAGAGAGAATGGAGAAAGTTGACAAGATCCTTGTGATGGCAAGATCATCCCCTTTGGACAAACATTTGATGGTGCAATGTTTGAAAAAGAAAGGCCATGTAGTTGCAGTCACCGGCGATGGCACAAATGATGCACCTGCTCTAAAAGAAGCTGATATAGGACTTTCTATGGGGATCCAAGGCACTGAGGTTGCCAAGGAAAGCTCTGACATTGTTATCCTAGATGATAACTTCAATTCAGTTGTTACTGTTTTAAAGTGGGGAAGATGTGTTTATAACAACATCCAAAAATTTATCCAGTTTCAACTTACCGTTAATGTTGCAGCTCTTGTGATAAATTTTATAGCTGCAGTTTCTTCTGGAAATGTTCCCCTAACAACAGTTCAACTACTATGGGTGAATCTCATTATGGATACTCTAGGAGCTTTGGCACTGGCTACAGAACGGCCTACAAAGGAGTTAATGCAGAAAAGGCCAGTAGGTAGAACTGAGCCACTTATTACCAACATTATGTGGAGAAACCTTTTAGCTCAAGCTTTATATCAGATTGCTATCTTGTTGGTTTTACAATTCCATGGAAAGTCAATCTTCCATGTAACTGAGGAGGTAAAGAATACTCTAATCTTTAATACTTTTGTTCTCTGCCAAGTTTTCAACGAGTTCAACTCGAGAAGTATGGAGAAACATAATGTATTCGAAGGCATTCACGAAAGCCACTTGTTTCTTGGAATTGTGGGATTTACTATTGTTCTTCAAGTCATGATGGTGGAATTCCTAAGGAAGTTTGCTGATACGGAAAGGTTAACATGGAACCAATGGGGAATTTGTATTGTAACTGCATCTGTGTCATGGCCAATTGCTTGGTTAGTAAAGTTCATACCTGTTTCAGAGAAACCTTTCTTCAAGATTAAGCAGTCTTTTTAA | 3126 | 0.412 | MSSSQNQKYDSSSFLIDISSALTRVTANYTINNAKKRWRFAYTAIYSRRVMLSLAKEVISKRNLHHYTKHFQTQSSSSSSTLDIFEPLVTPHVSNETNRYSLLPDVDKARLANMVKDKNLTALAEFEGVEGVANVLGSIPEKGILGNDDDIAKRRELFGSNTYQRPPPKVFLHFVLEAFNDTTIIILLVCAGLSLGFGIKEHGPGEGWYEGGSIFVAVFLVIVVSALSNFRQERQFDKLSKISNNIKVEVVRNGRPQQISIFDVLVGDIVSLKIGDQIPADGVFLAGHSLQVDESSMTGESDHVEIEPLKCPFLLSGAKVVDGYAQMLVTSVGINTAWGQMMSSISRDTNERTPLQARLDKLTSSIGKVGLSVAFLVLLVLLIRYFTGNTQDQNGIKEFRRGRTDINDTFNAVVSIVAAAVTIVVVAIPEGLPLAVTLTLAYSMKRMIADQAMVRKLSACETMGSATVICTDKTGTLTLNQMRVSKFWLGLENVIENFSNAMAPNVLELFHQGVGLNTTGTVYSPSSESEPEISGSPTEKAILLWAVSDLGMDMDELKKKHKVLHVETFNSQKKRSGVAIRKETNNTVHVHWKGAAEMILAMCSNYIDSNGTMKSLDEERSKLEKIIQGMAASSLRCIAFAHMEISEDFEKAHEILREDGLTLLGIVGLKDPCRPDVKKAVENCKLAGVEIKMITGDNIFTAKAIATECGILDLNNHVNAGEVVEGVEFRNYTEEERMEKVDKILVMARSSPLDKHLMVQCLKKKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFNSVVTVLKWGRCVYNNIQKFIQFQLTVNVAALVINFIAAVSSGNVPLTTVQLLWVNLIMDTLGALALATERPTKELMQKRPVGRTEPLITNIMWRNLLAQALYQIAILLVLQFHGKSIFHVTEEVKNTLIFNTFVLCQVFNEFNSRSMEKHNVFEGIHESHLFLGIVGFTIVLQVMMVEFLRKFADTERLTWNQWGICIVTASVSWPIAWLVKFIPVSEKPFFKIKQSF | 1041 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gabi2909g00040 | 1041 | Gene3D | - | 480 | 672 | IPR023299 | GO:0000166 | |
| Gabi2909g00040 | 1041 | PANTHER | CATION TRANSPORTING ATPASE | 81 | 1030 | - | - | |
| Gabi2909g00040 | 1041 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 476 | 677 | IPR023299 | GO:0000166 | |
| Gabi2909g00040 | 1041 | PRINTS | H+-transporting ATPase (proton pump) signature | 804 | 829 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Gabi2909g00040 | 1041 | PRINTS | H+-transporting ATPase (proton pump) signature | 772 | 788 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Gabi2909g00040 | 1041 | PRINTS | H+-transporting ATPase (proton pump) signature | 623 | 641 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Gabi2909g00040 | 1041 | FunFam | Calcium-transporting ATPase | 789 | 1031 | - | - | |
| Gabi2909g00040 | 1041 | Gene3D | - | 467 | 817 | IPR023214 | - | |
| Gabi2909g00040 | 1041 | NCBIfam | HAD-IC family P-type ATPase | 746 | 853 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Gabi2909g00040 | 1041 | NCBIfam | HAD-IC family P-type ATPase | 411 | 494 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Gabi2909g00040 | 1041 | NCBIfam | HAD-IC family P-type ATPase | 214 | 387 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Gabi2909g00040 | 1041 | Gene3D | - | 177 | 1027 | - | - | |
| Gabi2909g00040 | 1041 | SFLD | C1.7: P-type atpase like | 452 | 825 | - | - | |
| Gabi2909g00040 | 1041 | Pfam | Cation transporting ATPase, C-terminus | 857 | 1027 | IPR006068 | - | |
| Gabi2909g00040 | 1041 | PRINTS | P-type cation-transporting ATPase superfamily signature | 796 | 808 | - | - | |
| Gabi2909g00040 | 1041 | PRINTS | P-type cation-transporting ATPase superfamily signature | 772 | 791 | - | - | |
| Gabi2909g00040 | 1041 | PRINTS | P-type cation-transporting ATPase superfamily signature | 665 | 676 | - | - | |
| Gabi2909g00040 | 1041 | PRINTS | P-type cation-transporting ATPase superfamily signature | 470 | 484 | - | - | |
| Gabi2909g00040 | 1041 | PRINTS | P-type cation-transporting ATPase superfamily signature | 687 | 697 | - | - | |
| Gabi2909g00040 | 1041 | PRINTS | P-type cation-transporting ATPase superfamily signature | 293 | 307 | - | - | |
| Gabi2909g00040 | 1041 | Pfam | E1-E2 ATPase | 246 | 447 | - | - | |
| Gabi2909g00040 | 1041 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 472 | 478 | IPR018303 | - | |
| Gabi2909g00040 | 1041 | SUPERFAMILY | Calcium ATPase, transduction domain A | 245 | 344 | IPR008250 | - | |
| Gabi2909g00040 | 1041 | SMART | Cation_ATPase_N_a_2 | 125 | 199 | IPR004014 | - | |
| Gabi2909g00040 | 1041 | NCBIfam | calcium-translocating P-type ATPase, PMCA-type | 114 | 1029 | IPR006408 | GO:0005388|GO:0005524|GO:0016020|GO:0070588 | |
| Gabi2909g00040 | 1041 | Gene3D | - | 148 | 346 | - | - | |
| Gabi2909g00040 | 1041 | Pfam | Cation transporter/ATPase, N-terminus | 128 | 194 | IPR004014 | - | |
| Gabi2909g00040 | 1041 | Pfam | haloacid dehalogenase-like hydrolase | 468 | 786 | - | - | |
| Gabi2909g00040 | 1041 | SUPERFAMILY | HAD-like | 468 | 877 | IPR036412 | - | |
| Gabi2909g00040 | 1041 | FunFam | Calcium-transporting ATPase | 480 | 672 | - | - | |
| Gabi2909g00040 | 1041 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 127 | 1029 | IPR023298 | - | |
| Gabi2909g00040 | 1041 | FunFam | Calcium-transporting ATPase | 223 | 346 | - | - | |
| Gabi2909g00040 | 1041 | CDD | P-type_ATPase_Ca_PMCA-like | 151 | 905 | - | - | |
| Gabi2909g00040 | 1041 | SFLD | p-type atpase | 452 | 825 | IPR044492 | - | |
| Gabi2909g00040 | 1041 | FunFam | Calcium-transporting ATPase | 667 | 817 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gabi2909g00040 | Gabi-Chr2909 | 380882 | 384392 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gabi2909g00040 | 34 | 1035 | Primary Pumps ATPases | AT3G63380 | 69.890 | 0.0 | 1369 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gabi2909g00040 | K01537 | - | gmx:100790034 | 1696.4 |