Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2909g00033 ATGAGTCTGGACAAGAATCCTCGTGTATTTTTTGATGTCTCGATTGATGGGGACCCTGTGGAAAGAATTGTTATTCAGCTTTTTGCCAGTATAGTTCCTAAGACAGCTGAGAATTTCCGGGCGCTTTGTACAGGTGAAAAGGGCATTGGAGAATCTACTGGAAAACCTTTGCATTATAAAGGGACAACTTTTCATCGTATAATTAAAGGTTTTATGGCTCAAGGTGGTGATTTTTCAAAGGGTAATGGCACTGGTGGAGAAAGTATATATGGAGGAAAGTTTGCAGATGAAAATTTCAAACTAACACATGAAGGACCCGGTTTTCTTTCTATGGCAAATAGTGGTCCTAACACAAATGGGTCTCAGTTCTTTATTACATTCAAGCGCCAGCCTCATCTTGATGGGAAGCATGTTGTTTTTGGTAAAGTTGTCAAGGGAATGGACACTCTGAAGAAAATTGAGCAGGCGGGAACATCTGATGGGAAACCTACCCAACCAGTTAAAATTATTGATTGTGGTGAAATGTCTGAAACAAAAATTCAGCTCACAGTCGAGAAGGAGAAAGGAGCTCAGATGGTTCAAGTGATAAAGAAAGTGAGAGATCTAGTGCTAGGGGCAGTAGTTCTGGTGATGAGAAAGCTGATCACTCTGGTCGTAAAACACATGCTGACAATAATGCACAAACAAATCTAG 693 0.4055 MSLDKNPRVFFDVSIDGDPVERIVIQLFASIVPKTAENFRALCTGEKGIGESTGKPLHYKGTTFHRIIKGFMAQGGDFSKGNGTGGESIYGGKFADENFKLTHEGPGFLSMANSGPNTNGSQFFITFKRQPHLDGKHVVFGKVVKGMDTLKKIEQAGTSDGKPTQPVKIIDCGEMSETKIQLTVEKEKGAQMVQVIKKVRDLVLGAVVLVMRKLITLVVKHMLTIMHKQI 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2909g00033 230 CDD cyclophilin_ABH_like 7 173 - -
Gabi2909g00033 230 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 10 174 IPR002130 GO:0000413|GO:0003755
Gabi2909g00033 230 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 14 173 IPR002130 GO:0000413|GO:0003755
Gabi2909g00033 230 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 59 76 IPR020892 GO:0003755|GO:0006457
Gabi2909g00033 230 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 122 134 IPR002130 GO:0000413|GO:0003755
Gabi2909g00033 230 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 64 76 IPR002130 GO:0000413|GO:0003755
Gabi2909g00033 230 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 107 122 IPR002130 GO:0000413|GO:0003755
Gabi2909g00033 230 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 27 42 IPR002130 GO:0000413|GO:0003755
Gabi2909g00033 230 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 135 150 IPR002130 GO:0000413|GO:0003755
Gabi2909g00033 230 FunFam Peptidyl-prolyl cis-trans isomerase CYP95 1 182 - -
Gabi2909g00033 230 SUPERFAMILY Cyclophilin-like 4 175 IPR029000 -
Gabi2909g00033 230 Gene3D - 1 182 IPR029000 -
Gabi2909g00033 230 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 8 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2909g00033 Gabi-Chr2909 331998 335465 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2909g00033 25 172 U-box Gene Family AT5G67530 48.000 2.93e-35 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2909g00033 K09566 - gmx:100807327 353.599