Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2909g00022 ATGGAGACGCACGGCGGAGGAACCCTCCGTTACCGCAGCTCTCAGTCCCCTTCACCTTCCCACTCCGCTTCCGCCTACGCCACCTCTTCCATCCACAAGCGCAAGCGCGCGTCTGATGACCACGCGCCTCCCTTTCCCCCTTCTTCCTTCTCCGCCGACACGCGCGACGGCGCCCTCACCTCCAATTACGACCTCGAGAGCATCTCCGCCCGCGGCGCCGACTACGACAACGATTCCTCCATGCGCACCTTCACCGCTGCAAGGCTCAGCAACCCTCCCTCCGCTCCACGCAACACCAAGCTCAAGACCGATAATTCCAACGTTAAGATCGAGAATTCCGATGGCGCCAAAGACGCCGCACCCGCCGGGACTGGTGCCGTCGGCGCCGCCGCCACCGGCGGCTCCGTCCCCGGCATCGTGGTTAAGGAGGACGCAACTAAGATATTTACTGATAATTTACAAACTAGTGGTGCTTACAGCGCTAGGGAAGAGAGTCTCTGGAGAGAGGAGGAAGCAGGAAGGCTCAAATTCGTATGCTATTCGAATGATGGCATTGATGAACATATGATTTGGTTGATAGGATTGAAGAATATATTTGGTAAGCAACTTCCAAATATGCCCAAGGAGTACATTGTCCGACTTCTTATGGATAGGAGTCATAAGTCTGTAATGGTCATAAGGCGTAATCATGTTGTTGGAGGCATTACATATCGCCCATATGCAAGCCAGAAGTTTGGTGAGATAGCCTTTTGTGCAATTACAGCTGATGAGCAAGTAAAAGGTTATGGTACCAGATTGATGAATCACTTAAAACAGTATGCACGTGATAAAGATGGGTTGACACATTTTCTCACATATGCTGACAATCATGCTGTTGGCTATTTTATCAAACAGGGATTTACAGAAGAGATTCACTTGGAGAAAGATCGATGGCAAGGTTATATAAAGGATTATGACGGGGGGATTCTCATGGAATGCAAGATTGATCCAAAGCTCCCTTACACTGAATTGTCACCTATGATCCGTCGTCAAAGGCAGGCAATTGATGAAAAGATCAGAGAGCTGTCAAACTGTCACATTGTTTATACTGGAATTGATTTTCAGAAGAAAGAAGCTGGTATTCCCAAAAAAATTATTGAGGACATCCCTGGTTTGAGAGAGGCTGGATGGACTCCTGATCAGTGGGGTCATTCACGATTCAGAACTGTAAGTGGTTCCACTGACAGTTTGACCGCATTTATGCGTTCCCTTCTAAAGTCAATGCACGATCATGCTGATGCTTGGCCGTTCAAGGAACCAGTTGATGCACGGGATGATTATTATGACATCATCAAAGATCCAATGGATTTGAAGACAATGACTAAGAGGGTGGAGTCAGAGCAATATTATGTCACATTTGAGATGTTTCTTGCGGATGTCAGAAGAATGTTTGCGAATGCACGCACTTATAATTCTCCAGAAACCATTTATTACAAATGTTCTACAAGGCTTGAAGCTCACTTTCAATTGATGGGCTATTCCCCTTGGTATAATGCTGTCATTTTTCATACTTTATTGGCGGTGTTATGGGAAAAGGAAACATGGATCCCGGTGGCTATTACCTTTATACAGCAGCAATAA 1620 0.4685 METHGGGTLRYRSSQSPSPSHSASAYATSSIHKRKRASDDHAPPFPPSSFSADTRDGALTSNYDLESISARGADYDNDSSMRTFTAARLSNPPSAPRNTKLKTDNSNVKIENSDGAKDAAPAGTGAVGAAATGGSVPGIVVKEDATKIFTDNLQTSGAYSAREESLWREEEAGRLKFVCYSNDGIDEHMIWLIGLKNIFGKQLPNMPKEYIVRLLMDRSHKSVMVIRRNHVVGGITYRPYASQKFGEIAFCAITADEQVKGYGTRLMNHLKQYARDKDGLTHFLTYADNHAVGYFIKQGFTEEIHLEKDRWQGYIKDYDGGILMECKIDPKLPYTELSPMIRRQRQAIDEKIRELSNCHIVYTGIDFQKKEAGIPKKIIEDIPGLREAGWTPDQWGHSRFRTVSGSTDSLTAFMRSLLKSMHDHADAWPFKEPVDARDDYYDIIKDPMDLKTMTKRVESEQYYVTFEMFLADVRRMFANARTYNSPETIYYKCSTRLEAHFQLMGYSPWYNAVIFHTLLAVLWEKETWIPVAITFIQQQ 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2909g00022 539 Pfam Bromodomain 415 495 IPR001487 GO:0005515
Gabi2909g00022 539 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 189 330 IPR016181 -
Gabi2909g00022 539 MobiDBLite consensus disorder prediction 8 31 - -
Gabi2909g00022 539 CDD NAT_SF 222 277 - -
Gabi2909g00022 539 Gene3D - 397 504 IPR036427 GO:0005515
Gabi2909g00022 539 Gene3D - 171 335 - -
Gabi2909g00022 539 SUPERFAMILY Bromodomain 393 502 IPR036427 GO:0005515
Gabi2909g00022 539 ProSiteProfiles Bromodomain profile. 422 491 IPR001487 GO:0005515
Gabi2909g00022 539 ProSitePatterns Bromodomain signature. 427 483 IPR018359 -
Gabi2909g00022 539 PANTHER GH11602P 97 502 IPR037800 GO:0004402
Gabi2909g00022 539 SMART bromo_6 403 505 IPR001487 GO:0005515
Gabi2909g00022 539 PRINTS Bromodomain signature 437 453 IPR001487 GO:0005515
Gabi2909g00022 539 PRINTS Bromodomain signature 472 491 IPR001487 GO:0005515
Gabi2909g00022 539 FunFam Histone acetyltransferase KAT2A 172 336 - -
Gabi2909g00022 539 Pfam Acetyltransferase (GNAT) family 221 300 IPR000182 GO:0016747
Gabi2909g00022 539 CDD Bromo_gcn5_like 409 501 - -
Gabi2909g00022 539 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 175 329 IPR000182 GO:0016747
Gabi2909g00022 539 MobiDBLite consensus disorder prediction 1 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2909g00022 Gabi-Chr2909 222675 240799 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Gabi2909g00022 Bromodomain 1.5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2909g00022 K06062 - gmx:100791610 860.522