Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2909g00017 ATGGCGAATAACCCTTCCGAGGCTCCCGGCGATGACTTCCTCGAACAGATCCTTGGCCTCCCGACGTTCGCTTCCGGCGACTCTACCTTGGCCGGTACGGCTTCTCCGCCTCCGATGATGCTGCAGCTCAACTCCGCCGATGCTAACCCCCACCTCGCCGCCGGCGCTGCCTTTCACTCGCCGGTGTACCAGTTGGGGTTGAGCTTGAAGCCCGAGGATGCCTCCGGTAGTGGGAAACGCTTCCGCGACGACGTCATCGATGGTAGAGCTCAGAATGTAAGACCAGTTTTTCATGGGCAACCCATGCCTACCTCTATTCCTGCTGCTCCACATCCTCCAGCAATGCGTCCTAGGGTGCGGGCTAGAAGAGGACAGGCTACAGATCCACACAGCATAGCTGAACGGTTACGCAGAGAAAGAATAGCAGAAAGAATCAGGGCTTTGCAAGAACTGGTTCCAAGTGTCAACAAGACAGATAGAGCTGCCATGTTAGATGAAATTGTGGATTATGTGAAGTTCCTAAGGCTTCAAGTGAAGGTTTTAAGCATGAGTAGATTGGGCGGAGCTGGTGCAGTGGCACCACTGGTAACTGACATCCCATTATCATCAGTCGAGGAAGAAGGCGGTGAAGGTGCGAGAAACCGACCAGCTTGGGACAAGTGGTCAAATGATGGCACAGAAAGACAGGTAGCTAAGCTTATGGAAGAAAATGTTGGGGCTGCCATGCAATTTCTTCAAACAAAGGCACTCTGCATCATGCCCATCTCACTGGCATCAGCAATATACCAGTCACAACCACCGGACACCTCTAGTATAGTCAAGCCTGAAACTAATCCTCCTTCTTAG 846 0.5248 MANNPSEAPGDDFLEQILGLPTFASGDSTLAGTASPPPMMLQLNSADANPHLAAGAAFHSPVYQLGLSLKPEDASGSGKRFRDDVIDGRAQNVRPVFHGQPMPTSIPAAPHPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGGEGARNRPAWDKWSNDGTERQVAKLMEENVGAAMQFLQTKALCIMPISLASAIYQSQPPDTSSIVKPETNPPS 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2909g00017 281 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 125 174 IPR011598 GO:0046983
Gabi2909g00017 281 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 123 184 IPR036638 GO:0046983
Gabi2909g00017 281 Pfam Helix-loop-helix DNA-binding domain 130 174 IPR011598 GO:0046983
Gabi2909g00017 281 MobiDBLite consensus disorder prediction 95 129 - -
Gabi2909g00017 281 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 74 260 - -
Gabi2909g00017 281 SMART finulus 131 180 IPR011598 GO:0046983
Gabi2909g00017 281 FunFam Basic helix-loop-helix transcription factor 120 182 - -
Gabi2909g00017 281 Gene3D - 120 182 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2909g00017 Gabi-Chr2909 165632 170583 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2909g00017 58 280 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 77.447 7.20e-117 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi2909g00017 HLH 1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2909g00017 - - ccaj:109808880 459.144