Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2909g00016 ATGGCGAATAACCCTTCCGAGGCTCCCGGCGATGACTTCCTCGAACAGATCCTTGGCCTCCCGACGTTCGCTTCCGGCGACTCTACCTTGGCCGGTACGGCTTCTCCGCCTCCGATGATGCTGCAGCTCAACTCCGCCGATGCTAACCCCCACCTCGCCGCCGGCGCTGCCTTTCACTCGCCGGTGTACCAGTTGGGGTTGAGCTTGAAGCCCGAGGATGCCTCCGGTAGTGGGAAACGCTTCCGCGACGACGTCATCGATGGTAGAGCTCAGAATGTTTTTCATGGGCAACCCATGCCTACCTCTATTCCTGCTGCTCCACATCCTCCAGCAATGCGTCCTAGGGTGCGGGCTAGAAGAGGACAGGCTACAGATCCACACAGCATAGCTGAACGGTTACGCAGAGAAAGAATAGCAGAAAGAATCAGGGCTTTGCAAGAACTGGTTCCAAGTGTCAACAAGACAGATAGAGCTGCCATGTTAGATGAAATTGTGGATTATGTGAAGTTCCTAAGGCTTCAAGTGAAGGTTTTAAGCATGAGTAGATTGGGCGGAGCTGGTGCAGTGGCACCACTGGTAACTGACATCCCATTATCATCAGTCGAGGAAGAAGGCGGTGAAGGTGCGAGAAACCGACCAGCTTGGGACAAGTGGTCAAATGATGGCACAGAAAGACAGGTAGCTAAGCTTATGGAAGAAAATGTTGGGGCTGCCATGCAATTTCTTCAAACAAAGGCACTCTGCATCATGCCCATCTCACTGGCATCAGCAATATACCAGTCACAACCACCGGACACCTCTAGTATAGTCAAGCCTGAAACTAATCCTCCTTCTTAG 837 0.5257 MANNPSEAPGDDFLEQILGLPTFASGDSTLAGTASPPPMMLQLNSADANPHLAAGAAFHSPVYQLGLSLKPEDASGSGKRFRDDVIDGRAQNVFHGQPMPTSIPAAPHPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGGEGARNRPAWDKWSNDGTERQVAKLMEENVGAAMQFLQTKALCIMPISLASAIYQSQPPDTSSIVKPETNPPS 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2909g00016 278 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 122 171 IPR011598 GO:0046983
Gabi2909g00016 278 FunFam Basic helix-loop-helix transcription factor 117 179 - -
Gabi2909g00016 278 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 72 257 - -
Gabi2909g00016 278 Gene3D - 117 179 IPR036638 GO:0046983
Gabi2909g00016 278 SMART finulus 128 177 IPR011598 GO:0046983
Gabi2909g00016 278 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 120 181 IPR036638 GO:0046983
Gabi2909g00016 278 Pfam Helix-loop-helix DNA-binding domain 127 171 IPR011598 GO:0046983
Gabi2909g00016 278 MobiDBLite consensus disorder prediction 93 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2909g00016 Gabi-Chr2909 165632 170583 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2909g00016 58 277 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 77.021 1.57e-113 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi2909g00016 HLH 9.8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2909g00016 - - ccaj:109808880 464.536